Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01640 and AMB_RS01645 are separated by 86 nucleotides AMB_RS01645 and AMB_RS01650 are separated by 58 nucleotides AMB_RS01650 and AMB_RS01655 are separated by 170 nucleotides AMB_RS01655 and AMB_RS01660 are separated by 62 nucleotides
AMB_RS01640: AMB_RS01640 - response regulator, at 362,900 to 363,265
_RS01640
AMB_RS01645: AMB_RS01645 - chemotaxis protein CheW, at 363,352 to 363,837
_RS01645
AMB_RS01650: AMB_RS01650 - ATPase, at 363,896 to 366,556
_RS01650
AMB_RS01655: AMB_RS01655 - hypothetical protein, at 366,727 to 367,344
_RS01655
AMB_RS01660: AMB_RS01660 - class I SAM-dependent RNA methyltransferase, at 367,407 to 368,723
_RS01660
Position (kb) 363
364
365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 362.902 kb on - strand at 362.964 kb on + strand, within AMB_RS01640 at 362.964 kb on + strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.984 kb on - strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.999 kb on - strand, within AMB_RS01640 at 363.338 kb on - strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.353 kb on + strand at 363.409 kb on - strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.423 kb on - strand, within AMB_RS01645 at 363.471 kb on + strand, within AMB_RS01645 at 363.533 kb on + strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.826 kb on + strand at 363.827 kb on - strand at 363.926 kb on - strand at 363.926 kb on - strand at 363.972 kb on + strand at 363.973 kb on - strand at 363.973 kb on - strand at 363.973 kb on - strand at 364.344 kb on + strand, within AMB_RS01650 at 364.347 kb on + strand, within AMB_RS01650 at 364.950 kb on + strand, within AMB_RS01650 at 364.950 kb on + strand, within AMB_RS01650 at 364.951 kb on - strand, within AMB_RS01650 at 365.366 kb on - strand, within AMB_RS01650 at 365.366 kb on - strand, within AMB_RS01650 at 365.373 kb on + strand, within AMB_RS01650 at 365.373 kb on + strand, within AMB_RS01650 at 365.373 kb on + strand, within AMB_RS01650 at 365.374 kb on - strand, within AMB_RS01650 at 366.570 kb on - strand at 366.570 kb on - strand at 366.601 kb on + strand at 366.602 kb on - strand at 366.602 kb on - strand at 366.608 kb on - strand at 366.608 kb on - strand at 366.646 kb on + strand at 366.650 kb on - strand at 366.669 kb on + strand at 366.670 kb on - strand at 366.670 kb on - strand at 366.770 kb on - strand at 366.784 kb on - strand at 367.062 kb on + strand, within AMB_RS01655 at 367.092 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.244 kb on - strand, within AMB_RS01655 at 367.349 kb on - strand at 367.371 kb on - strand at 367.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 362,902 - -0.1 362,964 + AMB_RS01640 0.17 -0.1 362,964 + AMB_RS01640 0.17 +0.6 362,965 - AMB_RS01640 0.18 -0.7 362,965 - AMB_RS01640 0.18 -0.5 362,965 - AMB_RS01640 0.18 +0.3 362,984 - AMB_RS01640 0.23 +0.3 362,998 + AMB_RS01640 0.27 -0.8 362,998 + AMB_RS01640 0.27 -0.4 362,999 - AMB_RS01640 0.27 +0.1 363,338 - -0.0 363,348 + -1.3 363,348 + -0.4 363,348 + +0.4 363,348 + -0.2 363,348 + +0.6 363,349 - -0.0 363,349 - -1.5 363,349 - -0.4 363,349 - +0.4 363,350 + -0.7 363,350 + -0.7 363,350 + -0.1 363,350 + +0.7 363,350 + -1.2 363,351 - -0.7 363,351 - +0.4 363,351 - +1.1 363,351 - -0.3 363,351 - +0.3 363,353 + -1.2 363,409 - AMB_RS01645 0.12 +0.4 363,422 + AMB_RS01645 0.14 +1.4 363,422 + AMB_RS01645 0.14 +0.3 363,423 - AMB_RS01645 0.15 -0.1 363,471 + AMB_RS01645 0.24 -0.3 363,533 + AMB_RS01645 0.37 -1.5 363,534 - AMB_RS01645 0.37 +2.0 363,534 - AMB_RS01645 0.37 -0.4 363,826 + +0.1 363,827 - -2.6 363,926 - -0.4 363,926 - -0.1 363,972 + -0.4 363,973 - -0.3 363,973 - -0.5 363,973 - -0.1 364,344 + AMB_RS01650 0.17 -0.7 364,347 + AMB_RS01650 0.17 -1.1 364,950 + AMB_RS01650 0.40 +0.1 364,950 + AMB_RS01650 0.40 -0.2 364,951 - AMB_RS01650 0.40 -0.2 365,366 - AMB_RS01650 0.55 +1.9 365,366 - AMB_RS01650 0.55 +0.2 365,373 + AMB_RS01650 0.56 +2.5 365,373 + AMB_RS01650 0.56 +0.0 365,373 + AMB_RS01650 0.56 -0.1 365,374 - AMB_RS01650 0.56 -1.7 366,570 - +0.4 366,570 - -0.8 366,601 + -0.4 366,602 - -0.2 366,602 - -1.6 366,608 - -0.5 366,608 - -0.7 366,646 + -0.7 366,650 - +0.7 366,669 + +0.2 366,670 - -0.7 366,670 - -0.0 366,770 - -1.8 366,784 - +0.6 367,062 + AMB_RS01655 0.54 -1.1 367,092 - AMB_RS01655 0.59 -0.6 367,126 - AMB_RS01655 0.65 -1.2 367,126 - AMB_RS01655 0.65 +1.5 367,244 - AMB_RS01655 0.84 -1.3 367,349 - -0.0 367,371 - -1.0 367,371 - -0.4
Or see this region's nucleotide sequence