Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01200

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01190 and AMB_RS01195 are separated by 108 nucleotidesAMB_RS01195 and AMB_RS01200 are separated by 106 nucleotidesAMB_RS01200 and AMB_RS01205 are separated by 3 nucleotidesAMB_RS01205 and AMB_RS01210 are separated by 17 nucleotides AMB_RS01190: AMB_RS01190 - UbiD family decarboxylase, at 264,720 to 266,234 _RS01190 AMB_RS01195: AMB_RS01195 - DUF4237 domain-containing protein, at 266,343 to 266,819 _RS01195 AMB_RS01200: AMB_RS01200 - DUF4237 domain-containing protein, at 266,926 to 267,396 _RS01200 AMB_RS01205: AMB_RS01205 - nucleoside deaminase, at 267,400 to 267,828 _RS01205 AMB_RS01210: AMB_RS01210 - FCD domain-containing protein, at 267,846 to 268,622 _RS01210 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 266.043 kb on + strand, within AMB_RS01190at 266.044 kb on - strand, within AMB_RS01190at 266.238 kb on + strandat 266.239 kb on - strandat 266.248 kb on + strandat 266.263 kb on - strandat 266.266 kb on + strandat 266.298 kb on + strandat 266.298 kb on + strandat 266.300 kb on + strandat 266.301 kb on - strandat 266.388 kb on - strandat 266.628 kb on + strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.650 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.652 kb on - strand, within AMB_RS01195at 266.658 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 267.054 kb on + strand, within AMB_RS01200at 267.054 kb on + strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.158 kb on - strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 268.079 kb on - strand, within AMB_RS01210

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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266,043 + AMB_RS01190 0.87 -1.6
266,044 - AMB_RS01190 0.87 -1.0
266,238 + -1.2
266,239 - -0.3
266,248 + -2.1
266,263 - -0.1
266,266 + -0.3
266,298 + -1.6
266,298 + +0.3
266,300 + +0.0
266,301 - +1.6
266,388 - -0.6
266,628 + AMB_RS01195 0.60 -0.6
266,629 - AMB_RS01195 0.60 -0.6
266,629 - AMB_RS01195 0.60 -2.5
266,649 + AMB_RS01195 0.64 -0.2
266,649 + AMB_RS01195 0.64 +0.0
266,649 + AMB_RS01195 0.64 -0.7
266,650 + AMB_RS01195 0.64 -0.3
266,651 + AMB_RS01195 0.65 -1.3
266,651 + AMB_RS01195 0.65 -0.1
266,652 - AMB_RS01195 0.65 +0.8
266,658 + AMB_RS01195 0.66 -0.1
266,741 + AMB_RS01195 0.83 -0.9
266,741 + AMB_RS01195 0.83 -1.1
267,054 + AMB_RS01200 0.27 +0.4
267,054 + AMB_RS01200 0.27 +0.2
267,055 - AMB_RS01200 0.27 -0.5
267,055 - AMB_RS01200 0.27 -0.2
267,055 - AMB_RS01200 0.27 -1.6
267,055 - AMB_RS01200 0.27 -0.1
267,157 + AMB_RS01200 0.49 -1.2
267,157 + AMB_RS01200 0.49 +0.3
267,157 + AMB_RS01200 0.49 -0.1
267,157 + AMB_RS01200 0.49 +1.8
267,157 + AMB_RS01200 0.49 +1.9
267,158 - AMB_RS01200 0.49 -0.4
267,202 + AMB_RS01200 0.59 -1.1
267,202 + AMB_RS01200 0.59 -0.9
267,202 + AMB_RS01200 0.59 -0.3
267,202 + AMB_RS01200 0.59 +0.0
267,202 + AMB_RS01200 0.59 -2.8
267,202 + AMB_RS01200 0.59 +0.4
267,203 - AMB_RS01200 0.59 +0.0
267,203 - AMB_RS01200 0.59 -1.1
267,203 - AMB_RS01200 0.59 -1.0
267,203 - AMB_RS01200 0.59 +0.4
267,203 - AMB_RS01200 0.59 -0.6
267,203 - AMB_RS01200 0.59 +0.3
267,223 + AMB_RS01200 0.63 +1.0
267,223 + AMB_RS01200 0.63 +0.4
267,223 + AMB_RS01200 0.63 -0.9
267,226 + AMB_RS01200 0.64 -0.3
267,226 + AMB_RS01200 0.64 -1.1
267,226 + AMB_RS01200 0.64 -0.3
267,226 + AMB_RS01200 0.64 -0.1
267,226 + AMB_RS01200 0.64 -0.6
267,226 + AMB_RS01200 0.64 -1.7
267,227 - AMB_RS01200 0.64 +0.4
267,227 - AMB_RS01200 0.64 -0.1
267,227 - AMB_RS01200 0.64 -0.6
267,227 - AMB_RS01200 0.64 -1.6
267,233 - AMB_RS01200 0.65 +0.6
267,233 - AMB_RS01200 0.65 -0.3
267,233 - AMB_RS01200 0.65 -0.4
267,233 - AMB_RS01200 0.65 +0.3
268,079 - AMB_RS01210 0.30 +1.4

Or see this region's nucleotide sequence