Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00710

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00705 and AMB_RS00710 are separated by 4 nucleotidesAMB_RS00710 and AMB_RS00715 are separated by 12 nucleotidesAMB_RS00715 and AMB_RS00720 are separated by 144 nucleotides AMB_RS00705: AMB_RS00705 - class I SAM-dependent methyltransferase, at 160,751 to 161,995 _RS00705 AMB_RS00710: AMB_RS00710 - cupin domain-containing protein, at 162,000 to 162,479 _RS00710 AMB_RS00715: AMB_RS00715 - glycosyltransferase family 2 protein, at 162,492 to 163,199 _RS00715 AMB_RS00720: AMB_RS00720 - hypothetical protein, at 163,344 to 165,542 _RS00720 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1at 161.316 kb on + strand, within AMB_RS00705at 161.334 kb on + strand, within AMB_RS00705at 161.341 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.372 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.376 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.722 kb on - strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.002 kb on - strandat 162.073 kb on + strand, within AMB_RS00710at 162.232 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.257 kb on - strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.389 kb on + strand, within AMB_RS00710at 162.463 kb on + strandat 162.463 kb on + strandat 162.572 kb on - strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.587 kb on - strand, within AMB_RS00715at 162.605 kb on - strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.713 kb on - strand, within AMB_RS00715at 162.721 kb on + strand, within AMB_RS00715at 162.722 kb on - strand, within AMB_RS00715at 162.804 kb on + strand, within AMB_RS00715at 162.805 kb on - strand, within AMB_RS00715at 162.814 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.905 kb on - strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.967 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.153 kb on + strandat 163.153 kb on + strandat 163.182 kb on - strandat 163.208 kb on + strandat 163.223 kb on + strandat 163.223 kb on + strandat 163.224 kb on - strandat 163.242 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.421 kb on - strandat 163.421 kb on - strandat 163.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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161,316 + AMB_RS00705 0.45 -0.8
161,334 + AMB_RS00705 0.47 +0.3
161,341 + AMB_RS00705 0.47 -1.0
161,372 + AMB_RS00705 0.50 +1.0
161,372 + AMB_RS00705 0.50 -0.1
161,372 + AMB_RS00705 0.50 +0.5
161,376 + AMB_RS00705 0.50 -1.9
161,376 + AMB_RS00705 0.50 -0.1
161,376 + AMB_RS00705 0.50 -0.6
161,721 + AMB_RS00705 0.78 -1.4
161,721 + AMB_RS00705 0.78 -0.9
161,721 + AMB_RS00705 0.78 -0.9
161,721 + AMB_RS00705 0.78 -1.4
161,721 + AMB_RS00705 0.78 -1.9
161,721 + AMB_RS00705 0.78 -0.1
161,721 + AMB_RS00705 0.78 -0.4
161,721 + AMB_RS00705 0.78 -1.0
161,722 - AMB_RS00705 0.78 -0.2
161,766 + AMB_RS00705 0.82 -0.2
161,766 + AMB_RS00705 0.82 -0.6
161,766 + AMB_RS00705 0.82 -0.3
161,766 + AMB_RS00705 0.82 -1.0
161,766 + AMB_RS00705 0.82 +1.7
161,772 + AMB_RS00705 0.82 -0.5
161,772 + AMB_RS00705 0.82 +0.4
161,772 + AMB_RS00705 0.82 +0.6
161,772 + AMB_RS00705 0.82 -0.4
161,772 + AMB_RS00705 0.82 -1.1
161,772 + AMB_RS00705 0.82 -1.3
161,772 + AMB_RS00705 0.82 -0.3
161,772 + AMB_RS00705 0.82 -2.2
162,001 + +0.4
162,001 + -1.3
162,001 + -2.1
162,001 + -1.9
162,001 + -0.9
162,001 + -0.1
162,001 + -0.4
162,002 - -0.3
162,073 + AMB_RS00710 0.15 -2.1
162,232 + AMB_RS00710 0.48 -0.4
162,256 + AMB_RS00710 0.53 -0.8
162,256 + AMB_RS00710 0.53 -0.7
162,256 + AMB_RS00710 0.53 -0.6
162,256 + AMB_RS00710 0.53 +0.8
162,256 + AMB_RS00710 0.53 -1.1
162,256 + AMB_RS00710 0.53 -1.2
162,256 + AMB_RS00710 0.53 +0.4
162,256 + AMB_RS00710 0.53 -0.7
162,257 - AMB_RS00710 0.54 -2.6
162,262 + AMB_RS00710 0.55 -0.8
162,262 + AMB_RS00710 0.55 -0.7
162,344 + AMB_RS00710 0.72 -0.4
162,344 + AMB_RS00710 0.72 -0.8
162,389 + AMB_RS00710 0.81 +0.1
162,463 + -1.0
162,463 + -0.5
162,572 - AMB_RS00715 0.11 -0.1
162,586 + AMB_RS00715 0.13 -0.8
162,586 + AMB_RS00715 0.13 -0.6
162,587 - AMB_RS00715 0.13 -1.4
162,605 - AMB_RS00715 0.16 +0.3
162,712 + AMB_RS00715 0.31 -1.3
162,712 + AMB_RS00715 0.31 -0.7
162,713 - AMB_RS00715 0.31 -1.0
162,721 + AMB_RS00715 0.32 +0.4
162,722 - AMB_RS00715 0.32 -1.7
162,804 + AMB_RS00715 0.44 -1.7
162,805 - AMB_RS00715 0.44 -1.1
162,814 + AMB_RS00715 0.45 -1.1
162,889 + AMB_RS00715 0.56 +0.6
162,889 + AMB_RS00715 0.56 -0.8
162,890 - AMB_RS00715 0.56 -0.4
162,890 - AMB_RS00715 0.56 -0.2
162,890 - AMB_RS00715 0.56 -0.1
162,904 + AMB_RS00715 0.58 +0.4
162,904 + AMB_RS00715 0.58 -1.6
162,905 - AMB_RS00715 0.58 +0.4
162,966 + AMB_RS00715 0.67 +0.0
162,966 + AMB_RS00715 0.67 +1.0
162,967 - AMB_RS00715 0.67 -0.0
163,013 - AMB_RS00715 0.74 -0.3
163,013 - AMB_RS00715 0.74 -3.0
163,013 - AMB_RS00715 0.74 -1.0
163,153 + -0.2
163,153 + -0.3
163,182 - +0.1
163,208 + -0.1
163,223 + -1.4
163,223 + -0.6
163,224 - -0.0
163,242 + -0.6
163,420 + -0.3
163,420 + +0.0
163,420 + -0.5
163,421 - -0.9
163,421 - -0.1
163,421 - -1.0

Or see this region's nucleotide sequence