Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00155 and AMB_RS00160 overlap by 1 nucleotides AMB_RS00160 and AMB_RS00165 are separated by 116 nucleotides
AMB_RS00155: AMB_RS00155 - DNA polymerase III subunit delta, at 30,869 to 31,891
_RS00155
AMB_RS00160: AMB_RS00160 - hypothetical protein, at 31,891 to 32,943
_RS00160
AMB_RS00165: AMB_RS00165 - NAD-glutamate dehydrogenase, at 33,060 to 37,871
_RS00165
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 32.030 kb on + strand, within AMB_RS00160 at 32.059 kb on + strand, within AMB_RS00160 at 32.059 kb on + strand, within AMB_RS00160 at 32.083 kb on + strand, within AMB_RS00160 at 32.083 kb on + strand, within AMB_RS00160 at 32.207 kb on - strand, within AMB_RS00160 at 32.341 kb on + strand, within AMB_RS00160 at 32.341 kb on + strand, within AMB_RS00160 at 32.341 kb on + strand, within AMB_RS00160 at 32.342 kb on - strand, within AMB_RS00160 at 32.342 kb on - strand, within AMB_RS00160 at 32.342 kb on - strand, within AMB_RS00160 at 32.429 kb on - strand, within AMB_RS00160 at 32.599 kb on + strand, within AMB_RS00160 at 32.600 kb on - strand, within AMB_RS00160 at 32.773 kb on - strand, within AMB_RS00160 at 32.860 kb on + strand at 32.861 kb on - strand at 32.941 kb on + strand at 32.941 kb on + strand at 32.942 kb on - strand at 32.985 kb on + strand at 33.015 kb on + strand at 33.075 kb on + strand at 33.075 kb on + strand at 33.076 kb on - strand at 33.076 kb on - strand at 33.147 kb on + strand at 33.147 kb on + strand at 33.148 kb on - strand at 33.201 kb on + strand at 33.202 kb on - strand at 33.338 kb on + strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.917 kb on - strand, within AMB_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 32,030 + AMB_RS00160 0.13 -0.7 32,059 + AMB_RS00160 0.16 -0.6 32,059 + AMB_RS00160 0.16 +0.0 32,083 + AMB_RS00160 0.18 -0.8 32,083 + AMB_RS00160 0.18 -1.6 32,207 - AMB_RS00160 0.30 -1.0 32,341 + AMB_RS00160 0.43 -1.0 32,341 + AMB_RS00160 0.43 -0.8 32,341 + AMB_RS00160 0.43 -1.6 32,342 - AMB_RS00160 0.43 -0.4 32,342 - AMB_RS00160 0.43 -1.6 32,342 - AMB_RS00160 0.43 -0.1 32,429 - AMB_RS00160 0.51 -2.0 32,599 + AMB_RS00160 0.67 +0.4 32,600 - AMB_RS00160 0.67 -1.4 32,773 - AMB_RS00160 0.84 -0.9 32,860 + -2.4 32,861 - -1.9 32,941 + -0.4 32,941 + +0.3 32,942 - -0.3 32,985 + +0.4 33,015 + +0.0 33,075 + +0.0 33,075 + -0.9 33,076 - -0.2 33,076 - -0.4 33,147 + -0.6 33,147 + +0.4 33,148 - -0.2 33,201 + -1.5 33,202 - -0.1 33,338 + +1.0 33,339 - -0.2 33,339 - -0.3 33,339 - -0.3 33,917 - AMB_RS00165 0.18 -0.9
Or see this region's nucleotide sequence