Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25375

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25370 and ABIE40_RS25375 are separated by 4 nucleotidesABIE40_RS25375 and ABIE40_RS25380 are separated by 61 nucleotidesABIE40_RS25380 and ABIE40_RS25385 are separated by 61 nucleotides ABIE40_RS25370: ABIE40_RS25370 - ectoine hydrolase DoeA, at 1,248,704 to 1,249,882 _RS25370 ABIE40_RS25375: ABIE40_RS25375 - N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB, at 1,249,887 to 1,250,903 _RS25375 ABIE40_RS25380: ABIE40_RS25380 - ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB, at 1,250,965 to 1,251,816 _RS25380 ABIE40_RS25385: ABIE40_RS25385 - ectoine/hydroxyectoine ABC transporter permease subunit EhuC, at 1,251,878 to 1,252,543 _RS25385 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1248.944 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.983 kb on + strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1248.984 kb on - strand, within ABIE40_RS25370at 1249.082 kb on + strand, within ABIE40_RS25370at 1249.082 kb on + strand, within ABIE40_RS25370at 1249.082 kb on + strand, within ABIE40_RS25370at 1249.082 kb on + strand, within ABIE40_RS25370at 1249.082 kb on + strand, within ABIE40_RS25370at 1249.083 kb on - strand, within ABIE40_RS25370at 1249.085 kb on + strand, within ABIE40_RS25370at 1249.085 kb on + strand, within ABIE40_RS25370at 1249.085 kb on + strand, within ABIE40_RS25370at 1249.085 kb on + strand, within ABIE40_RS25370at 1249.086 kb on - strand, within ABIE40_RS25370at 1249.103 kb on + strand, within ABIE40_RS25370at 1249.104 kb on - strand, within ABIE40_RS25370at 1249.162 kb on + strand, within ABIE40_RS25370at 1249.162 kb on + strand, within ABIE40_RS25370at 1249.162 kb on + strand, within ABIE40_RS25370at 1249.163 kb on - strand, within ABIE40_RS25370at 1249.163 kb on - strand, within ABIE40_RS25370at 1249.202 kb on + strand, within ABIE40_RS25370at 1249.202 kb on + strand, within ABIE40_RS25370at 1249.202 kb on + strand, within ABIE40_RS25370at 1249.202 kb on + strand, within ABIE40_RS25370at 1249.203 kb on - strand, within ABIE40_RS25370at 1249.203 kb on - strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.204 kb on + strand, within ABIE40_RS25370at 1249.205 kb on - strand, within ABIE40_RS25370at 1249.205 kb on - strand, within ABIE40_RS25370at 1249.205 kb on - strand, within ABIE40_RS25370at 1249.205 kb on - strand, within ABIE40_RS25370at 1249.205 kb on - strand, within ABIE40_RS25370at 1249.301 kb on + strand, within ABIE40_RS25370at 1249.301 kb on + strand, within ABIE40_RS25370at 1249.302 kb on - strand, within ABIE40_RS25370at 1249.302 kb on - strand, within ABIE40_RS25370at 1249.423 kb on + strand, within ABIE40_RS25370at 1249.423 kb on + strand, within ABIE40_RS25370at 1249.424 kb on - strand, within ABIE40_RS25370at 1249.424 kb on - strand, within ABIE40_RS25370at 1249.461 kb on - strand, within ABIE40_RS25370at 1249.461 kb on - strand, within ABIE40_RS25370at 1249.635 kb on - strand, within ABIE40_RS25370at 1249.683 kb on - strand, within ABIE40_RS25370at 1249.683 kb on - strand, within ABIE40_RS25370at 1249.789 kb on + strandat 1249.789 kb on + strandat 1249.789 kb on + strandat 1249.980 kb on + strandat 1249.980 kb on + strandat 1249.980 kb on + strandat 1249.981 kb on - strandat 1249.981 kb on - strandat 1249.983 kb on - strandat 1249.983 kb on - strandat 1250.088 kb on + strand, within ABIE40_RS25375at 1250.089 kb on - strand, within ABIE40_RS25375at 1250.089 kb on - strand, within ABIE40_RS25375at 1250.089 kb on - strand, within ABIE40_RS25375at 1250.368 kb on - strand, within ABIE40_RS25375at 1250.368 kb on - strand, within ABIE40_RS25375at 1250.368 kb on - strand, within ABIE40_RS25375at 1250.546 kb on + strand, within ABIE40_RS25375at 1250.547 kb on - strand, within ABIE40_RS25375at 1250.657 kb on + strand, within ABIE40_RS25375at 1250.763 kb on + strand, within ABIE40_RS25375at 1250.764 kb on - strand, within ABIE40_RS25375at 1250.839 kb on + strandat 1250.901 kb on + strandat 1250.908 kb on - strandat 1250.947 kb on - strandat 1251.017 kb on + strandat 1251.064 kb on + strand, within ABIE40_RS25380at 1251.064 kb on + strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.065 kb on - strand, within ABIE40_RS25380at 1251.104 kb on - strand, within ABIE40_RS25380at 1251.319 kb on + strand, within ABIE40_RS25380at 1251.319 kb on + strand, within ABIE40_RS25380at 1251.320 kb on - strand, within ABIE40_RS25380at 1251.370 kb on + strand, within ABIE40_RS25380at 1251.370 kb on + strand, within ABIE40_RS25380at 1251.370 kb on + strand, within ABIE40_RS25380at 1251.370 kb on + strand, within ABIE40_RS25380at 1251.370 kb on + strand, within ABIE40_RS25380at 1251.371 kb on - strand, within ABIE40_RS25380at 1251.371 kb on - strand, within ABIE40_RS25380at 1251.498 kb on + strand, within ABIE40_RS25380at 1251.499 kb on - strand, within ABIE40_RS25380at 1251.637 kb on + strand, within ABIE40_RS25380at 1251.724 kb on + strand, within ABIE40_RS25380at 1251.724 kb on + strand, within ABIE40_RS25380at 1251.725 kb on - strand, within ABIE40_RS25380at 1251.725 kb on - strand, within ABIE40_RS25380at 1251.725 kb on - strand, within ABIE40_RS25380at 1251.745 kb on + strandat 1251.745 kb on + strandat 1251.746 kb on - strandat 1251.765 kb on + strandat 1251.765 kb on + strandat 1251.765 kb on + strandat 1251.814 kb on + strandat 1251.815 kb on - strandat 1251.857 kb on + strandat 1251.877 kb on + strandat 1251.877 kb on + strandat 1251.893 kb on + strandat 1251.893 kb on + strandat 1251.893 kb on + strandat 1251.893 kb on + strandat 1251.893 kb on + strandat 1251.893 kb on + strandat 1251.894 kb on - strandat 1251.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,248,944 + ABIE40_RS25370 0.20 -0.6
1,248,983 + ABIE40_RS25370 0.24 +0.5
1,248,983 + ABIE40_RS25370 0.24 -0.3
1,248,983 + ABIE40_RS25370 0.24 -1.1
1,248,983 + ABIE40_RS25370 0.24 -0.3
1,248,983 + ABIE40_RS25370 0.24 +0.5
1,248,983 + ABIE40_RS25370 0.24 -0.7
1,248,984 - ABIE40_RS25370 0.24 -0.4
1,248,984 - ABIE40_RS25370 0.24 -0.8
1,248,984 - ABIE40_RS25370 0.24 +0.6
1,248,984 - ABIE40_RS25370 0.24 -0.5
1,248,984 - ABIE40_RS25370 0.24 -0.9
1,248,984 - ABIE40_RS25370 0.24 +0.1
1,248,984 - ABIE40_RS25370 0.24 -0.2
1,248,984 - ABIE40_RS25370 0.24 -0.9
1,249,082 + ABIE40_RS25370 0.32 -0.4
1,249,082 + ABIE40_RS25370 0.32 -0.4
1,249,082 + ABIE40_RS25370 0.32 +1.2
1,249,082 + ABIE40_RS25370 0.32 +0.4
1,249,082 + ABIE40_RS25370 0.32 +0.2
1,249,083 - ABIE40_RS25370 0.32 +0.5
1,249,085 + ABIE40_RS25370 0.32 -0.3
1,249,085 + ABIE40_RS25370 0.32 +1.3
1,249,085 + ABIE40_RS25370 0.32 +1.0
1,249,085 + ABIE40_RS25370 0.32 +1.7
1,249,086 - ABIE40_RS25370 0.32 +0.9
1,249,103 + ABIE40_RS25370 0.34 -1.2
1,249,104 - ABIE40_RS25370 0.34 -0.5
1,249,162 + ABIE40_RS25370 0.39 -0.6
1,249,162 + ABIE40_RS25370 0.39 -1.1
1,249,162 + ABIE40_RS25370 0.39 +0.5
1,249,163 - ABIE40_RS25370 0.39 -0.3
1,249,163 - ABIE40_RS25370 0.39 +0.5
1,249,202 + ABIE40_RS25370 0.42 -2.8
1,249,202 + ABIE40_RS25370 0.42 +2.0
1,249,202 + ABIE40_RS25370 0.42 +1.2
1,249,202 + ABIE40_RS25370 0.42 -0.0
1,249,203 - ABIE40_RS25370 0.42 -1.5
1,249,203 - ABIE40_RS25370 0.42 -0.3
1,249,204 + ABIE40_RS25370 0.42 -0.7
1,249,204 + ABIE40_RS25370 0.42 -0.5
1,249,204 + ABIE40_RS25370 0.42 -0.3
1,249,204 + ABIE40_RS25370 0.42 -0.3
1,249,204 + ABIE40_RS25370 0.42 +0.2
1,249,204 + ABIE40_RS25370 0.42 +1.6
1,249,204 + ABIE40_RS25370 0.42 +1.3
1,249,204 + ABIE40_RS25370 0.42 +0.4
1,249,204 + ABIE40_RS25370 0.42 +0.0
1,249,204 + ABIE40_RS25370 0.42 +0.2
1,249,205 - ABIE40_RS25370 0.42 -1.7
1,249,205 - ABIE40_RS25370 0.42 -0.1
1,249,205 - ABIE40_RS25370 0.42 +0.7
1,249,205 - ABIE40_RS25370 0.42 +0.4
1,249,205 - ABIE40_RS25370 0.42 +1.5
1,249,301 + ABIE40_RS25370 0.51 +0.7
1,249,301 + ABIE40_RS25370 0.51 +2.4
1,249,302 - ABIE40_RS25370 0.51 +0.5
1,249,302 - ABIE40_RS25370 0.51 +0.6
1,249,423 + ABIE40_RS25370 0.61 -0.6
1,249,423 + ABIE40_RS25370 0.61 -0.5
1,249,424 - ABIE40_RS25370 0.61 +0.1
1,249,424 - ABIE40_RS25370 0.61 -0.1
1,249,461 - ABIE40_RS25370 0.64 -0.4
1,249,461 - ABIE40_RS25370 0.64 -0.1
1,249,635 - ABIE40_RS25370 0.79 -0.3
1,249,683 - ABIE40_RS25370 0.83 +0.9
1,249,683 - ABIE40_RS25370 0.83 -0.0
1,249,789 + -0.1
1,249,789 + +0.3
1,249,789 + -0.4
1,249,980 + -1.6
1,249,980 + +1.1
1,249,980 + +0.1
1,249,981 - -2.1
1,249,981 - +1.2
1,249,983 - -0.7
1,249,983 - -0.9
1,250,088 + ABIE40_RS25375 0.20 +0.2
1,250,089 - ABIE40_RS25375 0.20 -0.8
1,250,089 - ABIE40_RS25375 0.20 -0.2
1,250,089 - ABIE40_RS25375 0.20 +0.3
1,250,368 - ABIE40_RS25375 0.47 +0.4
1,250,368 - ABIE40_RS25375 0.47 -0.2
1,250,368 - ABIE40_RS25375 0.47 -1.0
1,250,546 + ABIE40_RS25375 0.65 -1.2
1,250,547 - ABIE40_RS25375 0.65 +0.8
1,250,657 + ABIE40_RS25375 0.76 -1.4
1,250,763 + ABIE40_RS25375 0.86 -0.8
1,250,764 - ABIE40_RS25375 0.86 +0.2
1,250,839 + -3.5
1,250,901 + -0.4
1,250,908 - -0.8
1,250,947 - -2.1
1,251,017 + -1.1
1,251,064 + ABIE40_RS25380 0.12 -0.9
1,251,064 + ABIE40_RS25380 0.12 -0.1
1,251,065 - ABIE40_RS25380 0.12 -0.5
1,251,065 - ABIE40_RS25380 0.12 -0.8
1,251,065 - ABIE40_RS25380 0.12 +0.4
1,251,065 - ABIE40_RS25380 0.12 +0.2
1,251,065 - ABIE40_RS25380 0.12 +1.8
1,251,065 - ABIE40_RS25380 0.12 +0.7
1,251,104 - ABIE40_RS25380 0.16 -0.0
1,251,319 + ABIE40_RS25380 0.42 +0.1
1,251,319 + ABIE40_RS25380 0.42 +0.1
1,251,320 - ABIE40_RS25380 0.42 +0.1
1,251,370 + ABIE40_RS25380 0.48 +0.4
1,251,370 + ABIE40_RS25380 0.48 -0.1
1,251,370 + ABIE40_RS25380 0.48 -1.0
1,251,370 + ABIE40_RS25380 0.48 -2.0
1,251,370 + ABIE40_RS25380 0.48 -1.0
1,251,371 - ABIE40_RS25380 0.48 -0.5
1,251,371 - ABIE40_RS25380 0.48 -0.2
1,251,498 + ABIE40_RS25380 0.63 -0.5
1,251,499 - ABIE40_RS25380 0.63 -0.4
1,251,637 + ABIE40_RS25380 0.79 -1.3
1,251,724 + ABIE40_RS25380 0.89 -2.0
1,251,724 + ABIE40_RS25380 0.89 -0.0
1,251,725 - ABIE40_RS25380 0.89 +0.5
1,251,725 - ABIE40_RS25380 0.89 -0.1
1,251,725 - ABIE40_RS25380 0.89 +0.5
1,251,745 + +1.0
1,251,745 + +0.4
1,251,746 - -0.4
1,251,765 + -0.1
1,251,765 + +0.0
1,251,765 + +1.4
1,251,814 + -0.1
1,251,815 - +0.9
1,251,857 + -0.9
1,251,877 + +0.1
1,251,877 + -0.3
1,251,893 + +0.6
1,251,893 + -1.5
1,251,893 + +1.9
1,251,893 + -1.0
1,251,893 + +0.3
1,251,893 + -0.6
1,251,894 - +0.3
1,251,894 - -0.1

Or see this region's nucleotide sequence