Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22950

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22945 and ABIE40_RS22950 are separated by 9 nucleotidesABIE40_RS22950 and ABIE40_RS22955 are separated by 2 nucleotidesABIE40_RS22955 and ABIE40_RS22960 are separated by 109 nucleotides ABIE40_RS22945: ABIE40_RS22945 - ABC transporter substrate-binding protein, at 736,151 to 737,086 _RS22945 ABIE40_RS22950: ABIE40_RS22950 - LLM class flavin-dependent oxidoreductase, at 737,096 to 738,169 _RS22950 ABIE40_RS22955: ABIE40_RS22955 - DsbA family protein, at 738,172 to 738,768 _RS22955 ABIE40_RS22960: ABIE40_RS22960 - Lrp/AsnC family transcriptional regulator, at 738,878 to 739,369 _RS22960 Position (kb) 737 738 739Strain fitness (log2 ratio) -2 -1 0 1 2 3at 736.147 kb on + strandat 736.147 kb on + strandat 736.148 kb on - strandat 736.148 kb on - strandat 736.199 kb on - strandat 736.199 kb on - strandat 736.343 kb on - strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.425 kb on - strand, within ABIE40_RS22945at 736.517 kb on + strand, within ABIE40_RS22945at 736.517 kb on + strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.648 kb on + strand, within ABIE40_RS22945at 736.648 kb on + strand, within ABIE40_RS22945at 736.763 kb on + strand, within ABIE40_RS22945at 736.763 kb on + strand, within ABIE40_RS22945at 737.000 kb on + strandat 737.000 kb on + strandat 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.772 kb on - strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.870 kb on + strand, within ABIE40_RS22950at 737.871 kb on - strand, within ABIE40_RS22950at 737.973 kb on + strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.976 kb on - strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.027 kb on - strand, within ABIE40_RS22950at 738.061 kb on - strand, within ABIE40_RS22950at 738.167 kb on + strandat 738.167 kb on + strandat 738.168 kb on - strandat 738.168 kb on - strandat 738.168 kb on - strandat 738.191 kb on - strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.221 kb on - strandat 738.221 kb on - strandat 738.222 kb on + strandat 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.273 kb on - strand, within ABIE40_RS22955at 738.463 kb on + strand, within ABIE40_RS22955at 738.514 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.709 kb on + strandat 738.709 kb on + strandat 738.709 kb on + strandat 738.709 kb on + strandat 738.918 kb on + strandat 738.924 kb on - strandat 739.012 kb on - strand, within ABIE40_RS22960at 739.023 kb on + strand, within ABIE40_RS22960at 739.059 kb on + strand, within ABIE40_RS22960at 739.084 kb on - strand, within ABIE40_RS22960

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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736,147 + +1.1
736,147 + -0.2
736,148 - +0.7
736,148 - -1.1
736,199 - +0.3
736,199 - +0.3
736,343 - ABIE40_RS22945 0.21 -0.1
736,382 + ABIE40_RS22945 0.25 +1.6
736,382 + ABIE40_RS22945 0.25 +0.4
736,382 + ABIE40_RS22945 0.25 +0.0
736,382 + ABIE40_RS22945 0.25 +0.2
736,383 - ABIE40_RS22945 0.25 -1.1
736,383 - ABIE40_RS22945 0.25 +0.6
736,383 - ABIE40_RS22945 0.25 -0.2
736,425 - ABIE40_RS22945 0.29 -0.5
736,517 + ABIE40_RS22945 0.39 +1.2
736,517 + ABIE40_RS22945 0.39 +1.2
736,518 - ABIE40_RS22945 0.39 +0.2
736,518 - ABIE40_RS22945 0.39 -0.3
736,518 - ABIE40_RS22945 0.39 +1.3
736,648 + ABIE40_RS22945 0.53 +0.9
736,648 + ABIE40_RS22945 0.53 -0.7
736,763 + ABIE40_RS22945 0.65 +0.3
736,763 + ABIE40_RS22945 0.65 -0.3
737,000 + +0.5
737,000 + +0.8
737,316 + ABIE40_RS22950 0.20 +0.5
737,316 + ABIE40_RS22950 0.20 +0.8
737,316 + ABIE40_RS22950 0.20 +0.4
737,317 - ABIE40_RS22950 0.21 +0.0
737,317 - ABIE40_RS22950 0.21 +0.4
737,546 + ABIE40_RS22950 0.42 -0.5
737,546 + ABIE40_RS22950 0.42 +0.4
737,547 - ABIE40_RS22950 0.42 +0.0
737,547 - ABIE40_RS22950 0.42 +0.1
737,642 + ABIE40_RS22950 0.51 -0.1
737,642 + ABIE40_RS22950 0.51 -0.4
737,643 - ABIE40_RS22950 0.51 -2.3
737,643 - ABIE40_RS22950 0.51 +1.3
737,772 - ABIE40_RS22950 0.63 +1.1
737,861 + ABIE40_RS22950 0.71 +0.9
737,861 + ABIE40_RS22950 0.71 +1.6
737,870 + ABIE40_RS22950 0.72 +0.2
737,871 - ABIE40_RS22950 0.72 +0.0
737,973 + ABIE40_RS22950 0.82 -1.1
737,974 - ABIE40_RS22950 0.82 -0.2
737,974 - ABIE40_RS22950 0.82 +0.6
737,974 - ABIE40_RS22950 0.82 -0.7
737,976 - ABIE40_RS22950 0.82 +0.1
738,026 + ABIE40_RS22950 0.87 +1.1
738,026 + ABIE40_RS22950 0.87 +1.6
738,027 - ABIE40_RS22950 0.87 -1.6
738,061 - ABIE40_RS22950 0.90 -1.5
738,167 + +0.9
738,167 + +2.7
738,168 - +0.0
738,168 - +0.0
738,168 - +0.1
738,191 - +0.7
738,220 + +0.0
738,220 + -0.1
738,220 + -1.8
738,220 + +0.9
738,220 + +1.5
738,220 + -0.3
738,220 + -2.4
738,220 + -0.4
738,220 + -0.4
738,220 + +0.5
738,220 + -0.4
738,220 + +0.3
738,221 - +0.2
738,221 - +2.4
738,222 + +0.5
738,272 + ABIE40_RS22955 0.17 +1.0
738,272 + ABIE40_RS22955 0.17 +0.8
738,272 + ABIE40_RS22955 0.17 -1.1
738,272 + ABIE40_RS22955 0.17 +0.2
738,273 - ABIE40_RS22955 0.17 +1.0
738,463 + ABIE40_RS22955 0.49 +0.3
738,514 + ABIE40_RS22955 0.57 +1.1
738,694 + ABIE40_RS22955 0.87 +0.7
738,694 + ABIE40_RS22955 0.87 +0.3
738,694 + ABIE40_RS22955 0.87 +0.9
738,694 + ABIE40_RS22955 0.87 -0.3
738,694 + ABIE40_RS22955 0.87 +0.1
738,695 - ABIE40_RS22955 0.88 -1.1
738,695 - ABIE40_RS22955 0.88 -0.1
738,695 - ABIE40_RS22955 0.88 +1.1
738,709 + -0.7
738,709 + +0.2
738,709 + +1.7
738,709 + -0.6
738,918 + +2.9
738,924 - +0.0
739,012 - ABIE40_RS22960 0.27 -0.9
739,023 + ABIE40_RS22960 0.29 -0.7
739,059 + ABIE40_RS22960 0.37 +0.9
739,084 - ABIE40_RS22960 0.42 -0.3

Or see this region's nucleotide sequence