Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19060

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
3,817,017	-				-0.1
3,817,096	+				-0.9
3,817,096	+				-0.3
3,817,096	+				-1.0
3,817,097	-				-2.0
3,817,097	-				-1.2
3,817,097	-				+1.1
3,817,168	+				-0.5
3,817,168	+				-0.7
3,817,168	+				+1.8
3,817,168	+				+1.0
3,817,168	+				+1.4
3,817,168	+				-0.4
3,817,168	+				+0.8
3,817,169	-				-0.1
3,817,169	-				-1.0
3,817,169	-				+0.1
3,817,169	-				+0.3
3,817,170	+				-1.5
3,817,171	-				-0.6
3,817,171	-				-0.8
3,817,184	-				-0.0
3,817,184	-				-0.2
3,817,184	-				+0.3
3,817,184	-				+1.0
3,817,402	+		ABIE40_RS19055	0.36	+0.5
3,817,402	+		ABIE40_RS19055	0.36	-0.3
3,817,402	+		ABIE40_RS19055	0.36	-0.9
3,817,453	+		ABIE40_RS19055	0.43	-0.2
3,817,453	+		ABIE40_RS19055	0.43	+0.1
3,817,454	-		ABIE40_RS19055	0.43	+4.1
3,817,454	-		ABIE40_RS19055	0.43	+0.5
3,817,454	-		ABIE40_RS19055	0.43	-0.1
3,817,474	+		ABIE40_RS19055	0.45	-0.7
3,817,569	+		ABIE40_RS19055	0.58	-1.7
3,817,569	+		ABIE40_RS19055	0.58	+1.2
3,817,569	+		ABIE40_RS19055	0.58	-0.4
3,817,569	+		ABIE40_RS19055	0.58	-0.0
3,817,570	-		ABIE40_RS19055	0.58	-1.2
3,817,570	-		ABIE40_RS19055	0.58	-0.2
3,817,570	-		ABIE40_RS19055	0.58	-1.2
3,817,570	-		ABIE40_RS19055	0.58	-2.7
3,817,570	-		ABIE40_RS19055	0.58	-2.0
3,817,570	-		ABIE40_RS19055	0.58	+0.1
3,817,570	-		ABIE40_RS19055	0.58	-0.7
3,817,571	+		ABIE40_RS19055	0.58	-0.1
3,817,571	+		ABIE40_RS19055	0.58	-0.9
3,817,571	+		ABIE40_RS19055	0.58	-0.5
3,817,572	-		ABIE40_RS19055	0.58	+0.6
3,817,807	-		ABIE40_RS19055	0.89	+1.8
3,817,807	-		ABIE40_RS19055	0.89	-0.1
3,817,807	-		ABIE40_RS19055	0.89	-1.2
3,817,886	-				-0.4
3,817,898	-				-1.1
3,817,922	+				-2.4
3,817,922	+				+0.2
3,817,923	-				-0.7
3,817,923	-				-0.6
3,817,979	+				-0.3
3,817,979	+				-1.9
3,817,980	-				-2.3
3,818,216	+		ABIE40_RS19060	0.34	+0.2
3,818,230	-		ABIE40_RS19060	0.36	+1.8
3,818,288	-		ABIE40_RS19060	0.44	-1.5
3,818,288	-		ABIE40_RS19060	0.44	+0.2
3,818,377	+		ABIE40_RS19060	0.56	-1.7
3,818,378	-		ABIE40_RS19060	0.56	-1.2
3,818,378	-		ABIE40_RS19060	0.56	-0.3
3,818,378	-		ABIE40_RS19060	0.56	-0.7
3,818,561	-		ABIE40_RS19060	0.81	+1.7
3,818,696	-				+0.5
3,818,754	-				+1.4
3,818,794	+				-0.8
3,818,794	+				-0.3
3,818,795	-				-0.1
3,818,795	-				+0.1
3,818,795	-				-0.0
3,818,795	-				-1.5
3,818,795	-				-0.6
3,818,852	+				-0.3
3,818,852	+				-0.1
3,818,852	+				-0.2
3,818,852	+				-0.5
3,818,852	+				+0.1
3,818,852	+				-1.8
3,818,852	+				-0.2
3,818,853	-				-0.5
3,818,853	-				-0.6
3,818,853	-				-1.9
3,818,853	-				-0.5
3,818,853	-				+0.4
3,818,853	-				-1.5
3,818,857	-				-0.6
3,818,857	-				-0.6
3,818,926	-				-0.5
3,818,931	-				-0.1
3,818,931	-				-0.4
3,818,949	+		ABIE40_RS19065	0.10	+0.4
3,818,950	-		ABIE40_RS19065	0.11	+0.2
3,818,951	+		ABIE40_RS19065	0.11	+0.7
3,819,002	+		ABIE40_RS19065	0.13	-0.1
3,819,002	+		ABIE40_RS19065	0.13	+0.7
3,819,002	+		ABIE40_RS19065	0.13	-0.8
3,819,002	+		ABIE40_RS19065	0.13	-0.8
3,819,003	-		ABIE40_RS19065	0.13	-0.9
3,819,017	+		ABIE40_RS19065	0.14	+0.3
3,819,017	+		ABIE40_RS19065	0.14	-0.3
3,819,018	-		ABIE40_RS19065	0.14	-0.9
3,819,018	-		ABIE40_RS19065	0.14	-1.3
3,819,018	-		ABIE40_RS19065	0.14	-0.4
3,819,112	-		ABIE40_RS19065	0.19	+0.2
3,819,112	-		ABIE40_RS19065	0.19	-0.9
3,819,112	-		ABIE40_RS19065	0.19	+0.1
3,819,113	+		ABIE40_RS19065	0.19	+2.8
3,819,113	+		ABIE40_RS19065	0.19	+0.5
3,819,113	+		ABIE40_RS19065	0.19	-0.6
3,819,114	-		ABIE40_RS19065	0.19	+2.1
3,819,114	-		ABIE40_RS19065	0.19	+1.8
3,819,114	-		ABIE40_RS19065	0.19	+0.0
3,819,306	-		ABIE40_RS19065	0.29	-0.7
3,819,399	-		ABIE40_RS19065	0.34	-0.4
3,819,461	+		ABIE40_RS19065	0.38	-0.9
3,819,461	+		ABIE40_RS19065	0.38	+0.1
3,819,461	+		ABIE40_RS19065	0.38	+0.4
3,819,461	+		ABIE40_RS19065	0.38	+0.8
3,819,461	+		ABIE40_RS19065	0.38	-0.2
3,819,461	+		ABIE40_RS19065	0.38	-0.2
3,819,462	-		ABIE40_RS19065	0.38	-0.5
3,819,462	-		ABIE40_RS19065	0.38	+0.1
3,819,526	-		ABIE40_RS19065	0.41	-0.4
3,819,526	-		ABIE40_RS19065	0.41	-2.2
3,819,602	+		ABIE40_RS19065	0.45	-0.4
3,819,602	+		ABIE40_RS19065	0.45	-0.7
3,819,602	+		ABIE40_RS19065	0.45	-0.4
3,819,622	-		ABIE40_RS19065	0.46	-0.8
3,819,622	-		ABIE40_RS19065	0.46	-0.0
3,819,623	+		ABIE40_RS19065	0.46	+0.1
3,819,623	+		ABIE40_RS19065	0.46	+1.8
3,819,623	+		ABIE40_RS19065	0.46	+1.4
3,819,623	+		ABIE40_RS19065	0.46	-0.4
3,819,623	+		ABIE40_RS19065	0.46	-1.0
3,819,623	+		ABIE40_RS19065	0.46	-0.3
3,819,623	+		ABIE40_RS19065	0.46	+0.0
3,819,624	-		ABIE40_RS19065	0.46	-0.6
3,819,624	-		ABIE40_RS19065	0.46	-0.1
3,819,624	-		ABIE40_RS19065	0.46	-0.9
3,819,624	-		ABIE40_RS19065	0.46	-0.8
3,819,624	-		ABIE40_RS19065	0.46	-0.7
3,819,624	-		ABIE40_RS19065	0.46	-0.1
3,819,624	-		ABIE40_RS19065	0.46	-2.3
3,819,624	-		ABIE40_RS19065	0.46	-0.3
3,819,624	-		ABIE40_RS19065	0.46	-0.6
3,819,637	-		ABIE40_RS19065	0.47	-1.5
3,819,650	+		ABIE40_RS19065	0.48	-0.7
3,819,650	+		ABIE40_RS19065	0.48	+0.4
3,819,651	-		ABIE40_RS19065	0.48	-0.3
3,819,651	-		ABIE40_RS19065	0.48	-0.8
3,819,651	-		ABIE40_RS19065	0.48	-0.8
3,819,651	-		ABIE40_RS19065	0.48	+0.4