Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS11370

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
2,206,575	+		ABIE40_RS11365	0.25	-0.2
2,206,576	-		ABIE40_RS11365	0.25	+2.7
2,206,576	-		ABIE40_RS11365	0.25	+2.8
2,206,576	-		ABIE40_RS11365	0.25	+2.5
2,206,576	-		ABIE40_RS11365	0.25	+2.6
2,206,602	-		ABIE40_RS11365	0.29	+3.0
2,206,602	-		ABIE40_RS11365	0.29	+4.0
2,206,605	-		ABIE40_RS11365	0.30	+4.7
2,206,912	-		ABIE40_RS11365	0.77	+2.9
2,206,925	-		ABIE40_RS11365	0.79	+2.1
2,206,961	-		ABIE40_RS11365	0.84	+1.0
2,207,066	-				+0.6
2,207,066	-				+1.4
2,207,066	-				-0.9
2,207,066	-				+2.2
2,207,111	-				+2.7
2,207,242	+				-0.1
2,207,242	+				+0.6
2,207,243	-				+0.8
2,207,243	-				+0.8
2,207,243	-				+0.4
2,207,244	+				-0.7
2,207,244	+				+0.7
2,207,244	+				+0.5
2,207,244	+				+0.3
2,207,245	-				+0.1
2,207,361	+		ABIE40_RS11370	0.21	-1.5
2,207,361	+		ABIE40_RS11370	0.21	+2.8
2,207,362	-		ABIE40_RS11370	0.21	+0.4
2,207,572	-		ABIE40_RS11370	0.44	+0.8
2,207,572	-		ABIE40_RS11370	0.44	+0.4
2,207,572	-		ABIE40_RS11370	0.44	-0.1
2,207,576	+		ABIE40_RS11370	0.44	+0.1
2,207,576	+		ABIE40_RS11370	0.44	+1.3
2,207,577	-		ABIE40_RS11370	0.44	-0.3
2,207,577	-		ABIE40_RS11370	0.44	+2.2
2,207,577	-		ABIE40_RS11370	0.44	+0.8
2,207,577	-		ABIE40_RS11370	0.44	-0.2
2,207,623	+		ABIE40_RS11370	0.49	-0.6
2,207,623	+		ABIE40_RS11370	0.49	+0.2
2,207,790	+		ABIE40_RS11370	0.68	-0.2
2,207,790	+		ABIE40_RS11370	0.68	+0.2
2,207,791	-		ABIE40_RS11370	0.68	-1.1
2,207,791	-		ABIE40_RS11370	0.68	-0.5
2,207,797	+		ABIE40_RS11370	0.69	+0.6
2,207,856	+		ABIE40_RS11370	0.75	+0.8
2,207,856	+		ABIE40_RS11370	0.75	+0.7
2,207,856	+		ABIE40_RS11370	0.75	+1.8
2,207,856	+		ABIE40_RS11370	0.75	+1.2
2,207,857	-		ABIE40_RS11370	0.75	+0.3
2,207,857	-		ABIE40_RS11370	0.75	-2.7
2,207,857	-		ABIE40_RS11370	0.75	-0.4
2,207,871	+		ABIE40_RS11370	0.77	-2.0
2,207,871	+		ABIE40_RS11370	0.77	-0.9
2,207,940	+		ABIE40_RS11370	0.84	-0.6
2,207,940	+		ABIE40_RS11370	0.84	-0.0
2,207,941	-		ABIE40_RS11370	0.84	+0.6
2,207,941	-		ABIE40_RS11370	0.84	-0.7
2,208,030	+				-0.2
2,208,030	+				+0.3
2,208,109	+				+0.3
2,208,110	-				+0.0
2,208,110	-				+0.3
2,208,199	+				+1.3
2,208,200	-				+0.6
2,208,200	-				+0.2
2,208,227	+				+0.9
2,208,227	+				-0.5
2,208,266	+				-0.6
2,208,266	+				-0.2
2,208,267	-				+0.7
2,208,267	-				+0.3
2,208,290	+				+0.4
2,208,380	+		ABIE40_RS11375	0.10	-0.3
2,208,380	+		ABIE40_RS11375	0.10	-0.9
2,208,381	-		ABIE40_RS11375	0.10	+0.5
2,208,381	-		ABIE40_RS11375	0.10	+0.6
2,208,409	+		ABIE40_RS11375	0.13	+1.0
2,208,409	+		ABIE40_RS11375	0.13	-2.8
2,208,409	+		ABIE40_RS11375	0.13	+1.1
2,208,410	-		ABIE40_RS11375	0.13	-0.1
2,208,590	+		ABIE40_RS11375	0.30	-0.3
2,208,590	+		ABIE40_RS11375	0.30	+0.2
2,208,590	+		ABIE40_RS11375	0.30	-0.7
2,208,590	+		ABIE40_RS11375	0.30	+0.3
2,208,590	+		ABIE40_RS11375	0.30	-0.3
2,208,590	+		ABIE40_RS11375	0.30	+0.1
2,208,590	+		ABIE40_RS11375	0.30	-1.4
2,208,590	+		ABIE40_RS11375	0.30	+0.7
2,208,591	-		ABIE40_RS11375	0.30	-0.9
2,208,591	-		ABIE40_RS11375	0.30	-0.4
2,208,591	-		ABIE40_RS11375	0.30	-0.8
2,208,591	-		ABIE40_RS11375	0.30	+0.6
2,208,591	-		ABIE40_RS11375	0.30	-0.3
2,208,591	-		ABIE40_RS11375	0.30	-0.9
2,208,591	-		ABIE40_RS11375	0.30	+1.4
2,208,591	-		ABIE40_RS11375	0.30	+0.5
2,208,591	-		ABIE40_RS11375	0.30	-0.3
2,208,592	+		ABIE40_RS11375	0.31	+0.2
2,208,592	+		ABIE40_RS11375	0.31	-0.3
2,208,592	+		ABIE40_RS11375	0.31	-0.7
2,208,592	+		ABIE40_RS11375	0.31	-0.4
2,208,592	+		ABIE40_RS11375	0.31	+1.2
2,208,592	+		ABIE40_RS11375	0.31	+0.1
2,208,592	+		ABIE40_RS11375	0.31	+0.6
2,208,592	+		ABIE40_RS11375	0.31	-0.8
2,208,593	-		ABIE40_RS11375	0.31	-1.9
2,208,593	-		ABIE40_RS11375	0.31	+0.2
2,208,593	-		ABIE40_RS11375	0.31	+2.1
2,208,593	-		ABIE40_RS11375	0.31	+1.8
2,208,614	+		ABIE40_RS11375	0.33	-0.4
2,208,614	+		ABIE40_RS11375	0.33	-0.1
2,208,614	+		ABIE40_RS11375	0.33	+0.1
2,208,614	+		ABIE40_RS11375	0.33	-0.5
2,208,615	-		ABIE40_RS11375	0.33	+2.2
2,208,615	-		ABIE40_RS11375	0.33	+0.6
2,208,615	-		ABIE40_RS11375	0.33	+0.8
2,208,659	+		ABIE40_RS11375	0.37	+0.4
2,208,689	+		ABIE40_RS11375	0.40	-2.7
2,208,689	+		ABIE40_RS11375	0.40	+0.6
2,208,689	+		ABIE40_RS11375	0.40	+0.1
2,208,689	+		ABIE40_RS11375	0.40	+0.5
2,208,690	-		ABIE40_RS11375	0.40	+1.1
2,208,690	-		ABIE40_RS11375	0.40	-0.4
2,208,690	-		ABIE40_RS11375	0.40	-1.6
2,208,835	+		ABIE40_RS11375	0.54	+3.8
2,208,835	+		ABIE40_RS11375	0.54	-1.0
2,208,835	+		ABIE40_RS11375	0.54	-0.7
2,208,836	-		ABIE40_RS11375	0.54	+0.6
2,208,935	+		ABIE40_RS11375	0.63	-0.4
2,208,935	+		ABIE40_RS11375	0.63	+0.1
2,208,936	-		ABIE40_RS11375	0.63	+2.4
2,208,936	-		ABIE40_RS11375	0.63	-0.0
2,208,936	-		ABIE40_RS11375	0.63	-0.4
2,208,936	-		ABIE40_RS11375	0.63	+0.7
2,208,936	-		ABIE40_RS11375	0.63	-0.2
2,208,938	+		ABIE40_RS11375	0.64	+0.9
2,208,938	+		ABIE40_RS11375	0.64	+0.6
2,208,939	-		ABIE40_RS11375	0.64	+0.4
2,208,939	-		ABIE40_RS11375	0.64	+0.6
2,209,031	+		ABIE40_RS11375	0.72	-0.9