Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS09545 and ABIE40_RS09550 are separated by 9 nucleotides ABIE40_RS09550 and ABIE40_RS09555 are separated by 1 nucleotides ABIE40_RS09555 and ABIE40_RS09560 overlap by 4 nucleotides
ABIE40_RS09545: ABIE40_RS09545 - anthranilate phosphoribosyltransferase, at 1,842,095 to 1,843,111
_RS09545
ABIE40_RS09550: ABIE40_RS09550 - indole-3-glycerol phosphate synthase TrpC, at 1,843,121 to 1,843,933
_RS09550
ABIE40_RS09555: ABIE40_RS09555 - cyclic pyranopterin monophosphate synthase MoaC, at 1,843,935 to 1,844,435
_RS09555
ABIE40_RS09560: ABIE40_RS09560 - gephyrin-like molybdotransferase Glp, at 1,844,432 to 1,845,658
_RS09560
Position (kb) 1843
1844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1842.362 kb on + strand, within ABIE40_RS09545 at 1842.362 kb on + strand, within ABIE40_RS09545 at 1842.367 kb on + strand, within ABIE40_RS09545 at 1842.971 kb on - strand, within ABIE40_RS09545 at 1843.109 kb on + strand at 1843.110 kb on - strand at 1843.502 kb on + strand, within ABIE40_RS09550 at 1843.503 kb on - strand, within ABIE40_RS09550 at 1843.503 kb on - strand, within ABIE40_RS09550 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.325 kb on + strand, within ABIE40_RS09555 at 1844.326 kb on - strand, within ABIE40_RS09555 at 1844.326 kb on - strand, within ABIE40_RS09555 at 1844.326 kb on - strand, within ABIE40_RS09555 at 1844.594 kb on - strand, within ABIE40_RS09560 at 1844.660 kb on - strand, within ABIE40_RS09560 at 1844.800 kb on + strand, within ABIE40_RS09560 at 1844.800 kb on + strand, within ABIE40_RS09560 at 1844.830 kb on + strand, within ABIE40_RS09560 at 1844.831 kb on - strand, within ABIE40_RS09560
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 1,842,362 + ABIE40_RS09545 0.26 -3.1 1,842,362 + ABIE40_RS09545 0.26 -2.9 1,842,367 + ABIE40_RS09545 0.27 -1.1 1,842,971 - ABIE40_RS09545 0.86 -3.0 1,843,109 + -0.1 1,843,110 - -1.6 1,843,502 + ABIE40_RS09550 0.47 -0.4 1,843,503 - ABIE40_RS09550 0.47 -1.8 1,843,503 - ABIE40_RS09550 0.47 -1.6 1,844,325 + ABIE40_RS09555 0.78 +0.6 1,844,325 + ABIE40_RS09555 0.78 +1.8 1,844,325 + ABIE40_RS09555 0.78 -0.4 1,844,325 + ABIE40_RS09555 0.78 +0.5 1,844,325 + ABIE40_RS09555 0.78 +0.1 1,844,325 + ABIE40_RS09555 0.78 +1.1 1,844,326 - ABIE40_RS09555 0.78 +0.6 1,844,326 - ABIE40_RS09555 0.78 +1.3 1,844,326 - ABIE40_RS09555 0.78 -0.9 1,844,594 - ABIE40_RS09560 0.13 -0.1 1,844,660 - ABIE40_RS09560 0.19 +1.3 1,844,800 + ABIE40_RS09560 0.30 +1.4 1,844,800 + ABIE40_RS09560 0.30 +3.0 1,844,830 + ABIE40_RS09560 0.32 +0.3 1,844,831 - ABIE40_RS09560 0.33 -1.1
Or see this region's nucleotide sequence