Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29040

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29035 and ABID97_RS29040 overlap by 4 nucleotidesABID97_RS29040 and ABID97_RS29045 are separated by 168 nucleotides ABID97_RS29035: ABID97_RS29035 - 3-isopropylmalate dehydrogenase, at 724,963 to 726,042 _RS29035 ABID97_RS29040: ABID97_RS29040 - IclR family transcriptional regulator, at 726,039 to 726,845 _RS29040 ABID97_RS29045: ABID97_RS29045 - tripartite tricarboxylate transporter substrate binding protein, at 727,014 to 728,030 _RS29045 Position (kb) 726 727Strain fitness (log2 ratio) -1 0 1at 725.375 kb on - strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035at 726.040 kb on + strandat 726.463 kb on + strand, within ABID97_RS29040at 726.464 kb on - strand, within ABID97_RS29040at 726.933 kb on + strandat 726.940 kb on + strandat 727.296 kb on + strand, within ABID97_RS29045at 727.297 kb on - strand, within ABID97_RS29045at 727.360 kb on - strand, within ABID97_RS29045at 727.776 kb on + strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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725,375 - ABID97_RS29035 0.38 -0.1
725,782 + ABID97_RS29035 0.76 -0.2
725,782 + ABID97_RS29035 0.76 -0.3
725,782 + ABID97_RS29035 0.76 -0.5
726,040 + -0.4
726,463 + ABID97_RS29040 0.53 -0.4
726,464 - ABID97_RS29040 0.53 -0.3
726,933 + -0.4
726,940 + +0.3
727,296 + ABID97_RS29045 0.28 +1.0
727,297 - ABID97_RS29045 0.28 -0.4
727,360 - ABID97_RS29045 0.34 -0.1
727,776 + ABID97_RS29045 0.75 -0.1
727,804 - ABID97_RS29045 0.78 -1.3
727,804 - ABID97_RS29045 0.78 +0.2

Or see this region's nucleotide sequence