Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28655 and ABID97_RS28660 overlap by 14 nucleotides ABID97_RS28660 and ABID97_RS28665 are separated by 29 nucleotides ABID97_RS28665 and ABID97_RS28670 are separated by 149 nucleotides ABID97_RS28670 and ABID97_RS28675 are separated by 531 nucleotides
ABID97_RS28655: ABID97_RS28655 - cytochrome d ubiquinol oxidase subunit II, at 650,926 to 651,933
_RS28655
ABID97_RS28660: ABID97_RS28660 - DUF2474 domain-containing protein, at 651,920 to 652,069
_RS28660
ABID97_RS28665: ABID97_RS28665 - response regulator, at 652,099 to 652,470
_RS28665
ABID97_RS28670: ABID97_RS28670 - hypothetical protein, at 652,620 to 652,898
_RS28670
ABID97_RS28675: ABID97_RS28675 - hypothetical protein, at 653,430 to 654,017
_RS28675
Position (kb) 652
653 Strain fitness (log2 ratio) -1
0
1
2 at 651.658 kb on + strand, within ABID97_RS28655 at 651.736 kb on + strand, within ABID97_RS28655 at 651.738 kb on + strand, within ABID97_RS28655 at 651.871 kb on + strand at 651.871 kb on + strand at 651.872 kb on - strand at 651.872 kb on - strand at 652.013 kb on + strand, within ABID97_RS28660 at 652.013 kb on + strand, within ABID97_RS28660 at 652.215 kb on - strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.236 kb on - strand, within ABID97_RS28665 at 652.236 kb on - strand, within ABID97_RS28665 at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.558 kb on - strand at 652.824 kb on + strand, within ABID97_RS28670 at 652.825 kb on - strand, within ABID97_RS28670 at 652.990 kb on + strand at 653.023 kb on + strand at 653.324 kb on - strand at 653.562 kb on + strand, within ABID97_RS28675 at 653.563 kb on - strand, within ABID97_RS28675
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 651,658 + ABID97_RS28655 0.73 +0.2 651,736 + ABID97_RS28655 0.80 +0.2 651,738 + ABID97_RS28655 0.81 -0.2 651,871 + -0.3 651,871 + +0.1 651,872 - +0.1 651,872 - +0.4 652,013 + ABID97_RS28660 0.62 +0.1 652,013 + ABID97_RS28660 0.62 +0.5 652,215 - ABID97_RS28665 0.31 +0.1 652,235 + ABID97_RS28665 0.37 -1.2 652,235 + ABID97_RS28665 0.37 -0.2 652,235 + ABID97_RS28665 0.37 -0.1 652,235 + ABID97_RS28665 0.37 -0.2 652,236 - ABID97_RS28665 0.37 +2.5 652,236 - ABID97_RS28665 0.37 -0.3 652,540 - +0.6 652,540 - -1.4 652,540 - +0.2 652,540 - +0.9 652,558 - +0.4 652,824 + ABID97_RS28670 0.73 +1.6 652,825 - ABID97_RS28670 0.73 +0.2 652,990 + +0.2 653,023 + +0.0 653,324 - -0.5 653,562 + ABID97_RS28675 0.22 +0.6 653,563 - ABID97_RS28675 0.23 +0.1
Or see this region's nucleotide sequence