Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26275

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26270 and ABID97_RS26275 are separated by 36 nucleotidesABID97_RS26275 and ABID97_RS26280 are separated by 4 nucleotides ABID97_RS26270: ABID97_RS26270 - Gfo/Idh/MocA family oxidoreductase, at 177,934 to 179,040 _RS26270 ABID97_RS26275: ABID97_RS26275 - quinone oxidoreductase, at 179,077 to 180,054 _RS26275 ABID97_RS26280: ABID97_RS26280 - zinc-dependent alcohol dehydrogenase family protein, at 180,059 to 181,081 _RS26280 Position (kb) 179 180 181Strain fitness (log2 ratio) -1 0 1at 178.208 kb on - strand, within ABID97_RS26270at 178.325 kb on + strand, within ABID97_RS26270at 178.326 kb on - strand, within ABID97_RS26270at 178.804 kb on + strand, within ABID97_RS26270at 178.804 kb on + strand, within ABID97_RS26270at 178.805 kb on - strand, within ABID97_RS26270at 178.859 kb on + strand, within ABID97_RS26270at 178.943 kb on + strandat 179.417 kb on + strand, within ABID97_RS26275at 180.549 kb on + strand, within ABID97_RS26280at 180.549 kb on + strand, within ABID97_RS26280at 180.684 kb on - strand, within ABID97_RS26280at 180.811 kb on - strand, within ABID97_RS26280

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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178,208 - ABID97_RS26270 0.25 +0.5
178,325 + ABID97_RS26270 0.35 +0.4
178,326 - ABID97_RS26270 0.35 -0.0
178,804 + ABID97_RS26270 0.79 -0.3
178,804 + ABID97_RS26270 0.79 +0.1
178,805 - ABID97_RS26270 0.79 -0.5
178,859 + ABID97_RS26270 0.84 -0.8
178,943 + +0.1
179,417 + ABID97_RS26275 0.35 +0.4
180,549 + ABID97_RS26280 0.48 +0.0
180,549 + ABID97_RS26280 0.48 -0.3
180,684 - ABID97_RS26280 0.61 +0.6
180,811 - ABID97_RS26280 0.74 -0.4

Or see this region's nucleotide sequence