Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25340 and ABID97_RS25345 overlap by 1 nucleotides ABID97_RS25345 and ABID97_RS25350 are separated by 90 nucleotides ABID97_RS25350 and ABID97_RS25355 are separated by 109 nucleotides ABID97_RS25355 and ABID97_RS25360 are separated by 157 nucleotides
ABID97_RS25340: ABID97_RS25340 - apolipoprotein N-acyltransferase, at 5,250,472 to 5,252,061
_RS25340
ABID97_RS25345: ABID97_RS25345 - transporter associated domain-containing protein, at 5,252,061 to 5,252,939
_RS25345
ABID97_RS25350: ABID97_RS25350 - GNAT family N-acetyltransferase, at 5,253,030 to 5,253,764
_RS25350
ABID97_RS25355: ABID97_RS25355 - Lrp/AsnC family transcriptional regulator, at 5,253,874 to 5,254,347
_RS25355
ABID97_RS25360: ABID97_RS25360 - 4-hydroxyphenylpyruvate dioxygenase, at 5,254,505 to 5,255,632
_RS25360
Position (kb) 5253
5254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5252.308 kb on + strand, within ABID97_RS25345 at 5252.308 kb on + strand, within ABID97_RS25345 at 5252.308 kb on + strand, within ABID97_RS25345 at 5252.308 kb on + strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.309 kb on - strand, within ABID97_RS25345 at 5252.623 kb on + strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.624 kb on - strand, within ABID97_RS25345 at 5252.694 kb on + strand, within ABID97_RS25345 at 5252.695 kb on - strand, within ABID97_RS25345 at 5252.951 kb on + strand at 5252.951 kb on + strand at 5252.951 kb on + strand at 5252.951 kb on + strand at 5252.952 kb on - strand at 5252.952 kb on - strand at 5252.952 kb on - strand at 5253.145 kb on + strand, within ABID97_RS25350 at 5253.146 kb on - strand, within ABID97_RS25350 at 5253.146 kb on - strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.478 kb on + strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.479 kb on - strand, within ABID97_RS25350 at 5253.523 kb on + strand, within ABID97_RS25350 at 5253.524 kb on - strand, within ABID97_RS25350 at 5253.524 kb on - strand, within ABID97_RS25350 at 5253.524 kb on - strand, within ABID97_RS25350 at 5253.554 kb on - strand, within ABID97_RS25350 at 5253.568 kb on + strand, within ABID97_RS25350 at 5253.773 kb on + strand at 5253.773 kb on + strand at 5253.773 kb on + strand at 5253.774 kb on - strand at 5253.775 kb on + strand at 5253.776 kb on - strand at 5253.825 kb on + strand at 5253.825 kb on + strand at 5253.826 kb on - strand at 5253.875 kb on + strand at 5253.876 kb on - strand at 5253.980 kb on + strand, within ABID97_RS25355 at 5253.980 kb on + strand, within ABID97_RS25355 at 5253.980 kb on + strand, within ABID97_RS25355 at 5253.980 kb on + strand, within ABID97_RS25355 at 5253.980 kb on + strand, within ABID97_RS25355 at 5253.981 kb on - strand, within ABID97_RS25355 at 5253.981 kb on - strand, within ABID97_RS25355 at 5253.981 kb on - strand, within ABID97_RS25355 at 5254.016 kb on + strand, within ABID97_RS25355 at 5254.016 kb on + strand, within ABID97_RS25355 at 5254.016 kb on + strand, within ABID97_RS25355 at 5254.017 kb on - strand, within ABID97_RS25355 at 5254.017 kb on - strand, within ABID97_RS25355 at 5254.074 kb on + strand, within ABID97_RS25355 at 5254.142 kb on + strand, within ABID97_RS25355 at 5254.142 kb on + strand, within ABID97_RS25355 at 5254.142 kb on + strand, within ABID97_RS25355 at 5254.142 kb on + strand, within ABID97_RS25355 at 5254.143 kb on - strand, within ABID97_RS25355 at 5254.190 kb on + strand, within ABID97_RS25355 at 5254.190 kb on + strand, within ABID97_RS25355 at 5254.191 kb on - strand, within ABID97_RS25355 at 5254.280 kb on + strand, within ABID97_RS25355 at 5254.280 kb on + strand, within ABID97_RS25355 at 5254.280 kb on + strand, within ABID97_RS25355 at 5254.280 kb on + strand, within ABID97_RS25355 at 5254.280 kb on + strand, within ABID97_RS25355 at 5254.281 kb on - strand, within ABID97_RS25355 at 5254.427 kb on + strand at 5254.428 kb on - strand at 5254.580 kb on + strand at 5254.580 kb on + strand at 5254.580 kb on + strand at 5254.581 kb on - strand at 5254.673 kb on + strand, within ABID97_RS25360 at 5254.673 kb on + strand, within ABID97_RS25360 at 5254.674 kb on - strand, within ABID97_RS25360 at 5254.674 kb on - strand, within ABID97_RS25360
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,252,308 + ABID97_RS25345 0.28 -3.1 5,252,308 + ABID97_RS25345 0.28 -0.6 5,252,308 + ABID97_RS25345 0.28 -0.8 5,252,308 + ABID97_RS25345 0.28 -2.6 5,252,309 - ABID97_RS25345 0.28 +1.0 5,252,309 - ABID97_RS25345 0.28 -2.0 5,252,309 - ABID97_RS25345 0.28 -2.1 5,252,309 - ABID97_RS25345 0.28 -1.0 5,252,309 - ABID97_RS25345 0.28 -3.4 5,252,309 - ABID97_RS25345 0.28 -3.0 5,252,309 - ABID97_RS25345 0.28 +0.2 5,252,623 + ABID97_RS25345 0.64 -1.3 5,252,624 - ABID97_RS25345 0.64 -1.4 5,252,624 - ABID97_RS25345 0.64 -0.8 5,252,624 - ABID97_RS25345 0.64 -1.6 5,252,624 - ABID97_RS25345 0.64 -1.6 5,252,624 - ABID97_RS25345 0.64 -2.9 5,252,624 - ABID97_RS25345 0.64 -1.0 5,252,694 + ABID97_RS25345 0.72 -1.2 5,252,695 - ABID97_RS25345 0.72 -0.5 5,252,951 + -2.8 5,252,951 + -3.1 5,252,951 + -2.1 5,252,951 + -1.0 5,252,952 - +0.5 5,252,952 - -1.2 5,252,952 - -1.2 5,253,145 + ABID97_RS25350 0.16 +0.3 5,253,146 - ABID97_RS25350 0.16 +0.4 5,253,146 - ABID97_RS25350 0.16 -0.1 5,253,478 + ABID97_RS25350 0.61 -0.1 5,253,478 + ABID97_RS25350 0.61 -0.6 5,253,478 + ABID97_RS25350 0.61 +0.1 5,253,478 + ABID97_RS25350 0.61 -0.2 5,253,478 + ABID97_RS25350 0.61 -0.0 5,253,478 + ABID97_RS25350 0.61 +0.2 5,253,479 - ABID97_RS25350 0.61 -0.4 5,253,479 - ABID97_RS25350 0.61 +0.4 5,253,479 - ABID97_RS25350 0.61 -0.9 5,253,479 - ABID97_RS25350 0.61 -0.1 5,253,479 - ABID97_RS25350 0.61 -0.5 5,253,479 - ABID97_RS25350 0.61 -0.3 5,253,479 - ABID97_RS25350 0.61 -0.5 5,253,523 + ABID97_RS25350 0.67 -0.4 5,253,524 - ABID97_RS25350 0.67 -0.5 5,253,524 - ABID97_RS25350 0.67 -0.4 5,253,524 - ABID97_RS25350 0.67 -0.6 5,253,554 - ABID97_RS25350 0.71 +0.7 5,253,568 + ABID97_RS25350 0.73 -0.1 5,253,773 + -0.2 5,253,773 + -0.0 5,253,773 + +1.0 5,253,774 - +0.1 5,253,775 + +0.0 5,253,776 - +0.8 5,253,825 + -0.3 5,253,825 + -0.1 5,253,826 - -1.0 5,253,875 + +0.4 5,253,876 - -0.2 5,253,980 + ABID97_RS25355 0.22 -0.5 5,253,980 + ABID97_RS25355 0.22 +0.3 5,253,980 + ABID97_RS25355 0.22 +0.6 5,253,980 + ABID97_RS25355 0.22 +0.3 5,253,980 + ABID97_RS25355 0.22 +0.1 5,253,981 - ABID97_RS25355 0.23 -0.0 5,253,981 - ABID97_RS25355 0.23 +0.2 5,253,981 - ABID97_RS25355 0.23 +0.1 5,254,016 + ABID97_RS25355 0.30 +0.2 5,254,016 + ABID97_RS25355 0.30 +1.3 5,254,016 + ABID97_RS25355 0.30 +0.1 5,254,017 - ABID97_RS25355 0.30 -0.2 5,254,017 - ABID97_RS25355 0.30 -1.2 5,254,074 + ABID97_RS25355 0.42 -0.2 5,254,142 + ABID97_RS25355 0.57 -0.1 5,254,142 + ABID97_RS25355 0.57 +0.2 5,254,142 + ABID97_RS25355 0.57 -0.2 5,254,142 + ABID97_RS25355 0.57 -0.1 5,254,143 - ABID97_RS25355 0.57 -0.1 5,254,190 + ABID97_RS25355 0.67 -0.1 5,254,190 + ABID97_RS25355 0.67 +0.1 5,254,191 - ABID97_RS25355 0.67 -0.2 5,254,280 + ABID97_RS25355 0.86 +0.2 5,254,280 + ABID97_RS25355 0.86 -0.1 5,254,280 + ABID97_RS25355 0.86 +0.1 5,254,280 + ABID97_RS25355 0.86 -0.3 5,254,280 + ABID97_RS25355 0.86 -0.3 5,254,281 - ABID97_RS25355 0.86 -0.7 5,254,427 + +0.4 5,254,428 - -0.2 5,254,580 + +0.3 5,254,580 + +0.1 5,254,580 + +0.3 5,254,581 - -0.5 5,254,673 + ABID97_RS25360 0.15 -0.4 5,254,673 + ABID97_RS25360 0.15 -0.5 5,254,674 - ABID97_RS25360 0.15 +0.2 5,254,674 - ABID97_RS25360 0.15 -1.1
Or see this region's nucleotide sequence