Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25320 and ABID97_RS25325 are separated by 10 nucleotides ABID97_RS25325 and ABID97_RS25330 overlap by 4 nucleotides ABID97_RS25330 and ABID97_RS25335 are separated by 11 nucleotides
ABID97_RS25320: ABID97_RS25320 - ABC transporter substrate-binding protein, at 5,246,439 to 5,247,425
_RS25320
ABID97_RS25325: ABID97_RS25325 - ABC transporter ATP-binding protein, at 5,247,436 to 5,248,266
_RS25325
ABID97_RS25330: ABID97_RS25330 - ABC transporter permease, at 5,248,263 to 5,249,069
_RS25330
ABID97_RS25335: ABID97_RS25335 - FAD-binding oxidoreductase, at 5,249,081 to 5,250,454
_RS25335
Position (kb) 5248
5249
5250 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5247.324 kb on + strand, within ABID97_RS25320 at 5247.324 kb on + strand, within ABID97_RS25320 at 5247.384 kb on + strand at 5247.384 kb on + strand at 5247.385 kb on - strand at 5247.520 kb on + strand, within ABID97_RS25325 at 5247.520 kb on + strand, within ABID97_RS25325 at 5247.521 kb on - strand, within ABID97_RS25325 at 5248.657 kb on + strand, within ABID97_RS25330 at 5248.658 kb on - strand, within ABID97_RS25330 at 5248.741 kb on - strand, within ABID97_RS25330 at 5248.741 kb on - strand, within ABID97_RS25330 at 5248.741 kb on - strand, within ABID97_RS25330 at 5248.741 kb on - strand, within ABID97_RS25330 at 5248.741 kb on - strand, within ABID97_RS25330 at 5248.809 kb on + strand, within ABID97_RS25330 at 5248.809 kb on + strand, within ABID97_RS25330 at 5248.912 kb on - strand, within ABID97_RS25330 at 5249.336 kb on + strand, within ABID97_RS25335 at 5249.336 kb on + strand, within ABID97_RS25335 at 5249.337 kb on - strand, within ABID97_RS25335 at 5249.387 kb on + strand, within ABID97_RS25335 at 5249.388 kb on - strand, within ABID97_RS25335 at 5249.388 kb on - strand, within ABID97_RS25335 at 5249.388 kb on - strand, within ABID97_RS25335 at 5249.507 kb on + strand, within ABID97_RS25335 at 5249.507 kb on + strand, within ABID97_RS25335 at 5249.508 kb on - strand, within ABID97_RS25335 at 5249.570 kb on + strand, within ABID97_RS25335 at 5249.570 kb on + strand, within ABID97_RS25335 at 5249.571 kb on - strand, within ABID97_RS25335 at 5249.571 kb on - strand, within ABID97_RS25335 at 5249.966 kb on + strand, within ABID97_RS25335 at 5249.966 kb on + strand, within ABID97_RS25335 at 5249.967 kb on - strand, within ABID97_RS25335 at 5249.967 kb on - strand, within ABID97_RS25335 at 5249.967 kb on - strand, within ABID97_RS25335 at 5249.967 kb on - strand, within ABID97_RS25335 at 5249.985 kb on - strand, within ABID97_RS25335
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,247,324 + ABID97_RS25320 0.90 -0.3 5,247,324 + ABID97_RS25320 0.90 -0.2 5,247,384 + +0.1 5,247,384 + -1.3 5,247,385 - +0.4 5,247,520 + ABID97_RS25325 0.10 +0.0 5,247,520 + ABID97_RS25325 0.10 +1.0 5,247,521 - ABID97_RS25325 0.10 -0.5 5,248,657 + ABID97_RS25330 0.49 +0.1 5,248,658 - ABID97_RS25330 0.49 -0.3 5,248,741 - ABID97_RS25330 0.59 -0.1 5,248,741 - ABID97_RS25330 0.59 -0.2 5,248,741 - ABID97_RS25330 0.59 -0.1 5,248,741 - ABID97_RS25330 0.59 -0.8 5,248,741 - ABID97_RS25330 0.59 -0.3 5,248,809 + ABID97_RS25330 0.68 -0.5 5,248,809 + ABID97_RS25330 0.68 -2.8 5,248,912 - ABID97_RS25330 0.80 +0.1 5,249,336 + ABID97_RS25335 0.19 -0.2 5,249,336 + ABID97_RS25335 0.19 -0.8 5,249,337 - ABID97_RS25335 0.19 -0.5 5,249,387 + ABID97_RS25335 0.22 -0.1 5,249,388 - ABID97_RS25335 0.22 -0.9 5,249,388 - ABID97_RS25335 0.22 +1.1 5,249,388 - ABID97_RS25335 0.22 -0.6 5,249,507 + ABID97_RS25335 0.31 -0.2 5,249,507 + ABID97_RS25335 0.31 -0.5 5,249,508 - ABID97_RS25335 0.31 -0.6 5,249,570 + ABID97_RS25335 0.36 -0.5 5,249,570 + ABID97_RS25335 0.36 +0.1 5,249,571 - ABID97_RS25335 0.36 -0.6 5,249,571 - ABID97_RS25335 0.36 -0.2 5,249,966 + ABID97_RS25335 0.64 -0.2 5,249,966 + ABID97_RS25335 0.64 -0.6 5,249,967 - ABID97_RS25335 0.64 +0.2 5,249,967 - ABID97_RS25335 0.64 +0.6 5,249,967 - ABID97_RS25335 0.64 -1.3 5,249,967 - ABID97_RS25335 0.64 -1.7 5,249,985 - ABID97_RS25335 0.66 -0.6
Or see this region's nucleotide sequence