Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23080 and ABID97_RS23085 are separated by 62 nucleotides ABID97_RS23085 and ABID97_RS23090 overlap by 11 nucleotides ABID97_RS23090 and ABID97_RS23095 are separated by 11 nucleotides ABID97_RS23095 and ABID97_RS23100 overlap by 4 nucleotides ABID97_RS23100 and ABID97_RS23105 are separated by 31 nucleotides
ABID97_RS23080: ABID97_RS23080 - Sec-independent protein translocase subunit TatA, at 4,776,623 to 4,776,871
_RS23080
ABID97_RS23085: ABID97_RS23085 - histidine triad nucleotide-binding protein, at 4,776,934 to 4,777,293
_RS23085
ABID97_RS23090: ABID97_RS23090 - hypothetical protein, at 4,777,283 to 4,777,672
_RS23090
ABID97_RS23095: ABID97_RS23095 - phosphoribosyl-ATP diphosphatase, at 4,777,684 to 4,778,064
_RS23095
ABID97_RS23100: ABID97_RS23100 - phosphoribosyl-AMP cyclohydrolase, at 4,778,061 to 4,778,450
_RS23100
ABID97_RS23105: ABID97_RS23105 - imidazole glycerol phosphate synthase subunit HisF, at 4,778,482 to 4,779,267
_RS23105
Position (kb) 4777
4778
4779 Strain fitness (log2 ratio) -1
0
1
2 at 4776.929 kb on - strand at 4777.226 kb on + strand, within ABID97_RS23085 at 4777.226 kb on + strand, within ABID97_RS23085 at 4777.227 kb on - strand, within ABID97_RS23085 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.607 kb on - strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4778.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,776,929 - -0.2 4,777,226 + ABID97_RS23085 0.81 +0.3 4,777,226 + ABID97_RS23085 0.81 +0.0 4,777,227 - ABID97_RS23085 0.81 +1.2 4,777,431 + ABID97_RS23090 0.38 +0.0 4,777,431 + ABID97_RS23090 0.38 +0.1 4,777,431 + ABID97_RS23090 0.38 +1.5 4,777,431 + ABID97_RS23090 0.38 +1.8 4,777,432 - ABID97_RS23090 0.38 +0.3 4,777,432 - ABID97_RS23090 0.38 -0.1 4,777,432 - ABID97_RS23090 0.38 -0.9 4,777,432 - ABID97_RS23090 0.38 +0.4 4,777,432 - ABID97_RS23090 0.38 +0.1 4,777,607 - ABID97_RS23090 0.83 -0.2 4,777,608 + ABID97_RS23090 0.83 +0.7 4,777,608 + ABID97_RS23090 0.83 +0.1 4,777,608 + ABID97_RS23090 0.83 -1.0 4,777,608 + ABID97_RS23090 0.83 +1.4 4,777,608 + ABID97_RS23090 0.83 +0.3 4,777,608 + ABID97_RS23090 0.83 +0.3 4,777,608 + ABID97_RS23090 0.83 +0.5 4,777,608 + ABID97_RS23090 0.83 +0.6 4,777,608 + ABID97_RS23090 0.83 +0.2 4,777,608 + ABID97_RS23090 0.83 +0.1 4,777,608 + ABID97_RS23090 0.83 -0.1 4,777,608 + ABID97_RS23090 0.83 +0.8 4,777,608 + ABID97_RS23090 0.83 +0.9 4,777,608 + ABID97_RS23090 0.83 +0.4 4,777,609 - ABID97_RS23090 0.84 +0.5 4,777,609 - ABID97_RS23090 0.84 +0.7 4,777,609 - ABID97_RS23090 0.84 -1.7 4,777,609 - ABID97_RS23090 0.84 -0.5 4,778,456 + +0.6
Or see this region's nucleotide sequence