Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21655

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21650 and ABID97_RS21655 are separated by 57 nucleotidesABID97_RS21655 and ABID97_RS21660 are separated by 58 nucleotidesABID97_RS21660 and ABID97_RS21665 are separated by 132 nucleotides ABID97_RS21650: ABID97_RS21650 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 4,479,311 to 4,480,618 _RS21650 ABID97_RS21655: ABID97_RS21655 - ArsC family reductase, at 4,480,676 to 4,481,035 _RS21655 ABID97_RS21660: ABID97_RS21660 - hypothetical protein, at 4,481,094 to 4,481,714 _RS21660 ABID97_RS21665: ABID97_RS21665 - pyrimidine/purine nucleoside phosphorylase, at 4,481,847 to 4,482,173 _RS21665 Position (kb) 4480 4481 4482Strain fitness (log2 ratio) -1 0 1 2at 4480.657 kb on - strandat 4480.985 kb on - strand, within ABID97_RS21655at 4480.985 kb on - strand, within ABID97_RS21655at 4481.033 kb on + strandat 4481.033 kb on + strandat 4481.033 kb on + strandat 4481.247 kb on + strand, within ABID97_RS21660at 4481.248 kb on - strand, within ABID97_RS21660at 4481.260 kb on - strand, within ABID97_RS21660at 4481.260 kb on - strand, within ABID97_RS21660at 4481.260 kb on - strand, within ABID97_RS21660at 4481.280 kb on + strand, within ABID97_RS21660at 4481.338 kb on - strand, within ABID97_RS21660at 4481.427 kb on + strand, within ABID97_RS21660at 4481.428 kb on - strand, within ABID97_RS21660at 4481.451 kb on + strand, within ABID97_RS21660at 4481.469 kb on + strand, within ABID97_RS21660at 4481.551 kb on - strand, within ABID97_RS21660at 4481.551 kb on - strand, within ABID97_RS21660at 4481.551 kb on - strand, within ABID97_RS21660at 4481.571 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.601 kb on + strand, within ABID97_RS21660at 4481.602 kb on - strand, within ABID97_RS21660at 4481.602 kb on - strand, within ABID97_RS21660at 4481.602 kb on - strand, within ABID97_RS21660at 4481.602 kb on - strand, within ABID97_RS21660at 4481.602 kb on - strand, within ABID97_RS21660at 4481.619 kb on + strand, within ABID97_RS21660at 4481.619 kb on + strand, within ABID97_RS21660at 4481.619 kb on + strand, within ABID97_RS21660

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,480,657 - +0.1
4,480,985 - ABID97_RS21655 0.86 +0.2
4,480,985 - ABID97_RS21655 0.86 +0.8
4,481,033 + +0.8
4,481,033 + +0.5
4,481,033 + +1.1
4,481,247 + ABID97_RS21660 0.25 +0.6
4,481,248 - ABID97_RS21660 0.25 -0.8
4,481,260 - ABID97_RS21660 0.27 +0.5
4,481,260 - ABID97_RS21660 0.27 -0.6
4,481,260 - ABID97_RS21660 0.27 -0.4
4,481,280 + ABID97_RS21660 0.30 +0.2
4,481,338 - ABID97_RS21660 0.39 -0.5
4,481,427 + ABID97_RS21660 0.54 +0.0
4,481,428 - ABID97_RS21660 0.54 -0.7
4,481,451 + ABID97_RS21660 0.57 +0.7
4,481,469 + ABID97_RS21660 0.60 -0.2
4,481,551 - ABID97_RS21660 0.74 +0.2
4,481,551 - ABID97_RS21660 0.74 -1.5
4,481,551 - ABID97_RS21660 0.74 -0.2
4,481,571 + ABID97_RS21660 0.77 -0.0
4,481,601 + ABID97_RS21660 0.82 -0.5
4,481,601 + ABID97_RS21660 0.82 -0.1
4,481,601 + ABID97_RS21660 0.82 -0.7
4,481,601 + ABID97_RS21660 0.82 +0.8
4,481,601 + ABID97_RS21660 0.82 +0.1
4,481,601 + ABID97_RS21660 0.82 +0.3
4,481,601 + ABID97_RS21660 0.82 +0.1
4,481,601 + ABID97_RS21660 0.82 -0.2
4,481,601 + ABID97_RS21660 0.82 -1.7
4,481,602 - ABID97_RS21660 0.82 -0.3
4,481,602 - ABID97_RS21660 0.82 +0.2
4,481,602 - ABID97_RS21660 0.82 +0.1
4,481,602 - ABID97_RS21660 0.82 +0.5
4,481,602 - ABID97_RS21660 0.82 -1.4
4,481,619 + ABID97_RS21660 0.85 +2.7
4,481,619 + ABID97_RS21660 0.85 -0.0
4,481,619 + ABID97_RS21660 0.85 -0.3

Or see this region's nucleotide sequence