Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20295 and ABID97_RS20300 are separated by 131 nucleotides ABID97_RS20300 and ABID97_RS20305 are separated by 62 nucleotides ABID97_RS20305 and ABID97_RS20310 are separated by 103 nucleotides
ABID97_RS20295: ABID97_RS20295 - N-acetylmuramoyl-L-alanine amidase, at 4,188,108 to 4,189,688
_RS20295
ABID97_RS20300: ABID97_RS20300 - glycine zipper domain-containing protein, at 4,189,820 to 4,190,107
_RS20300
ABID97_RS20305: ABID97_RS20305 - DedA family protein, at 4,190,170 to 4,190,838
_RS20305
ABID97_RS20310: ABID97_RS20310 - DNA mismatch repair endonuclease MutL, at 4,190,942 to 4,192,825
_RS20310
Position (kb)
4189
4190
4191 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4189.760 kb on + strand at 4189.804 kb on + strand at 4190.042 kb on + strand, within ABID97_RS20300 at 4190.043 kb on - strand, within ABID97_RS20300 at 4190.043 kb on - strand, within ABID97_RS20300 at 4190.045 kb on + strand, within ABID97_RS20300 at 4190.045 kb on + strand, within ABID97_RS20300 at 4190.046 kb on - strand, within ABID97_RS20300 at 4190.078 kb on + strand, within ABID97_RS20300 at 4190.078 kb on + strand, within ABID97_RS20300 at 4190.078 kb on + strand, within ABID97_RS20300 at 4190.078 kb on + strand, within ABID97_RS20300 at 4190.079 kb on - strand at 4190.079 kb on - strand at 4190.079 kb on - strand at 4190.082 kb on - strand at 4190.102 kb on + strand at 4190.102 kb on + strand at 4190.102 kb on + strand at 4190.103 kb on - strand at 4190.930 kb on + strand at 4190.931 kb on - strand at 4190.931 kb on - strand at 4190.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,189,760 + -0.3 4,189,804 + -1.3 4,190,042 + ABID97_RS20300 0.77 -1.0 4,190,043 - ABID97_RS20300 0.77 -1.5 4,190,043 - ABID97_RS20300 0.77 -0.2 4,190,045 + ABID97_RS20300 0.78 -0.5 4,190,045 + ABID97_RS20300 0.78 -0.0 4,190,046 - ABID97_RS20300 0.78 -0.5 4,190,078 + ABID97_RS20300 0.90 -1.3 4,190,078 + ABID97_RS20300 0.90 -1.1 4,190,078 + ABID97_RS20300 0.90 -0.2 4,190,078 + ABID97_RS20300 0.90 -0.8 4,190,079 - -0.4 4,190,079 - +1.8 4,190,079 - -2.3 4,190,082 - -1.3 4,190,102 + -0.5 4,190,102 + +0.8 4,190,102 + -0.7 4,190,103 - -0.4 4,190,930 + -0.6 4,190,931 - -1.7 4,190,931 - -0.7 4,190,931 - +0.0
Or see this region's nucleotide sequence