Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20300

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS20295 and ABID97_RS20300 are separated by 131 nucleotidesABID97_RS20300 and ABID97_RS20305 are separated by 62 nucleotidesABID97_RS20305 and ABID97_RS20310 are separated by 103 nucleotides ABID97_RS20295: ABID97_RS20295 - N-acetylmuramoyl-L-alanine amidase, at 4,188,108 to 4,189,688 _RS20295 ABID97_RS20300: ABID97_RS20300 - glycine zipper domain-containing protein, at 4,189,820 to 4,190,107 _RS20300 ABID97_RS20305: ABID97_RS20305 - DedA family protein, at 4,190,170 to 4,190,838 _RS20305 ABID97_RS20310: ABID97_RS20310 - DNA mismatch repair endonuclease MutL, at 4,190,942 to 4,192,825 _RS20310 Position (kb) 4189 4190 4191Strain fitness (log2 ratio) -2 -1 0 1 2at 4189.760 kb on + strandat 4189.804 kb on + strandat 4190.042 kb on + strand, within ABID97_RS20300at 4190.043 kb on - strand, within ABID97_RS20300at 4190.043 kb on - strand, within ABID97_RS20300at 4190.045 kb on + strand, within ABID97_RS20300at 4190.045 kb on + strand, within ABID97_RS20300at 4190.046 kb on - strand, within ABID97_RS20300at 4190.078 kb on + strand, within ABID97_RS20300at 4190.078 kb on + strand, within ABID97_RS20300at 4190.078 kb on + strand, within ABID97_RS20300at 4190.078 kb on + strand, within ABID97_RS20300at 4190.079 kb on - strandat 4190.079 kb on - strandat 4190.079 kb on - strandat 4190.082 kb on - strandat 4190.102 kb on + strandat 4190.102 kb on + strandat 4190.102 kb on + strandat 4190.103 kb on - strandat 4190.930 kb on + strandat 4190.931 kb on - strandat 4190.931 kb on - strandat 4190.931 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
4,189,760 + -0.3
4,189,804 + -1.3
4,190,042 + ABID97_RS20300 0.77 -1.0
4,190,043 - ABID97_RS20300 0.77 -1.5
4,190,043 - ABID97_RS20300 0.77 -0.2
4,190,045 + ABID97_RS20300 0.78 -0.5
4,190,045 + ABID97_RS20300 0.78 -0.0
4,190,046 - ABID97_RS20300 0.78 -0.5
4,190,078 + ABID97_RS20300 0.90 -1.3
4,190,078 + ABID97_RS20300 0.90 -1.1
4,190,078 + ABID97_RS20300 0.90 -0.2
4,190,078 + ABID97_RS20300 0.90 -0.8
4,190,079 - -0.4
4,190,079 - +1.8
4,190,079 - -2.3
4,190,082 - -1.3
4,190,102 + -0.5
4,190,102 + +0.8
4,190,102 + -0.7
4,190,103 - -0.4
4,190,930 + -0.6
4,190,931 - -1.7
4,190,931 - -0.7
4,190,931 - +0.0

Or see this region's nucleotide sequence