Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19325 and ABID97_RS19330 are separated by 4 nucleotides ABID97_RS19330 and ABID97_RS19335 overlap by 1 nucleotides ABID97_RS19335 and ABID97_RS19340 overlap by 4 nucleotides ABID97_RS19340 and ABID97_RS19345 overlap by 2 nucleotides
ABID97_RS19325: ABID97_RS19325 - DUF2894 domain-containing protein, at 3,988,358 to 3,988,975
_RS19325
ABID97_RS19330: ABID97_RS19330 - OmpA family protein, at 3,988,980 to 3,989,639
_RS19330
ABID97_RS19335: ABID97_RS19335 - DUF802 domain-containing protein, at 3,989,639 to 3,991,729
_RS19335
ABID97_RS19340: ABID97_RS19340 - DUF3348 domain-containing protein, at 3,991,726 to 3,992,658
_RS19340
ABID97_RS19345: ABID97_RS19345 - AAA family ATPase, at 3,992,657 to 3,995,734
_RS19345
Position (kb)
3989
3990
3991
3992 Strain fitness (log2 ratio)
-2
-1
0
1 at 3989.751 kb on + strand at 3989.751 kb on + strand at 3989.752 kb on - strand at 3989.754 kb on + strand at 3989.755 kb on - strand at 3991.410 kb on + strand, within ABID97_RS19335 at 3991.410 kb on + strand, within ABID97_RS19335 at 3991.606 kb on - strand at 3991.606 kb on - strand at 3991.606 kb on - strand at 3991.659 kb on + strand at 3991.710 kb on + strand at 3991.711 kb on - strand at 3992.440 kb on + strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.584 kb on + strand at 3992.584 kb on + strand at 3992.584 kb on + strand at 3992.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,989,751 + +1.1 3,989,751 + -0.5 3,989,752 - -0.9 3,989,754 + +1.7 3,989,755 - -2.0 3,991,410 + ABID97_RS19335 0.85 -0.4 3,991,410 + ABID97_RS19335 0.85 -0.8 3,991,606 - -0.9 3,991,606 - -1.0 3,991,606 - -1.6 3,991,659 + -0.2 3,991,710 + -0.2 3,991,711 - -0.4 3,992,440 + ABID97_RS19340 0.77 -1.6 3,992,441 - ABID97_RS19340 0.77 +0.1 3,992,441 - ABID97_RS19340 0.77 +0.4 3,992,441 - ABID97_RS19340 0.77 -1.0 3,992,584 + -0.5 3,992,584 + -0.1 3,992,584 + -1.1 3,992,698 + -1.1
Or see this region's nucleotide sequence