Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19335

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19325 and ABID97_RS19330 are separated by 4 nucleotidesABID97_RS19330 and ABID97_RS19335 overlap by 1 nucleotidesABID97_RS19335 and ABID97_RS19340 overlap by 4 nucleotidesABID97_RS19340 and ABID97_RS19345 overlap by 2 nucleotides ABID97_RS19325: ABID97_RS19325 - DUF2894 domain-containing protein, at 3,988,358 to 3,988,975 _RS19325 ABID97_RS19330: ABID97_RS19330 - OmpA family protein, at 3,988,980 to 3,989,639 _RS19330 ABID97_RS19335: ABID97_RS19335 - DUF802 domain-containing protein, at 3,989,639 to 3,991,729 _RS19335 ABID97_RS19340: ABID97_RS19340 - DUF3348 domain-containing protein, at 3,991,726 to 3,992,658 _RS19340 ABID97_RS19345: ABID97_RS19345 - AAA family ATPase, at 3,992,657 to 3,995,734 _RS19345 Position (kb) 3989 3990 3991 3992Strain fitness (log2 ratio) -2 -1 0 1at 3989.751 kb on + strandat 3989.751 kb on + strandat 3989.752 kb on - strandat 3989.754 kb on + strandat 3989.755 kb on - strandat 3991.410 kb on + strand, within ABID97_RS19335at 3991.410 kb on + strand, within ABID97_RS19335at 3991.606 kb on - strandat 3991.606 kb on - strandat 3991.606 kb on - strandat 3991.659 kb on + strandat 3991.710 kb on + strandat 3991.711 kb on - strandat 3992.440 kb on + strand, within ABID97_RS19340at 3992.441 kb on - strand, within ABID97_RS19340at 3992.441 kb on - strand, within ABID97_RS19340at 3992.441 kb on - strand, within ABID97_RS19340at 3992.584 kb on + strandat 3992.584 kb on + strandat 3992.584 kb on + strandat 3992.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,989,751 + +1.1
3,989,751 + -0.5
3,989,752 - -0.9
3,989,754 + +1.7
3,989,755 - -2.0
3,991,410 + ABID97_RS19335 0.85 -0.4
3,991,410 + ABID97_RS19335 0.85 -0.8
3,991,606 - -0.9
3,991,606 - -1.0
3,991,606 - -1.6
3,991,659 + -0.2
3,991,710 + -0.2
3,991,711 - -0.4
3,992,440 + ABID97_RS19340 0.77 -1.6
3,992,441 - ABID97_RS19340 0.77 +0.1
3,992,441 - ABID97_RS19340 0.77 +0.4
3,992,441 - ABID97_RS19340 0.77 -1.0
3,992,584 + -0.5
3,992,584 + -0.1
3,992,584 + -1.1
3,992,698 + -1.1

Or see this region's nucleotide sequence