Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13390 and ABID97_RS13395 are separated by 28 nucleotides ABID97_RS13395 and ABID97_RS13400 are separated by 8 nucleotides ABID97_RS13400 and ABID97_RS13405 are separated by 4 nucleotides
ABID97_RS13390: ABID97_RS13390 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,788,559 to 2,790,034
_RS13390
ABID97_RS13395: ABID97_RS13395 - tripartite tricarboxylate transporter substrate-binding protein, at 2,790,063 to 2,791,031
_RS13395
ABID97_RS13400: ABID97_RS13400 - cupin domain-containing protein, at 2,791,040 to 2,791,621
_RS13400
ABID97_RS13405: ABID97_RS13405 - fumarylacetoacetate hydrolase family protein, at 2,791,626 to 2,792,615
_RS13405
Position (kb)
2790
2791
2792 Strain fitness (log2 ratio)
-1
0
1 at 2789.823 kb on - strand, within ABID97_RS13390 at 2790.355 kb on - strand, within ABID97_RS13395 at 2790.435 kb on + strand, within ABID97_RS13395 at 2790.436 kb on - strand, within ABID97_RS13395 at 2790.467 kb on - strand, within ABID97_RS13395 at 2790.467 kb on - strand, within ABID97_RS13395 at 2790.499 kb on - strand, within ABID97_RS13395 at 2791.779 kb on + strand, within ABID97_RS13405 at 2791.779 kb on + strand, within ABID97_RS13405 at 2792.005 kb on + strand, within ABID97_RS13405
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,789,823 - ABID97_RS13390 0.86 +0.2 2,790,355 - ABID97_RS13395 0.30 -1.4 2,790,435 + ABID97_RS13395 0.38 -0.0 2,790,436 - ABID97_RS13395 0.38 +0.2 2,790,467 - ABID97_RS13395 0.42 -0.6 2,790,467 - ABID97_RS13395 0.42 +0.1 2,790,499 - ABID97_RS13395 0.45 -0.1 2,791,779 + ABID97_RS13405 0.15 -0.1 2,791,779 + ABID97_RS13405 0.15 -1.0 2,792,005 + ABID97_RS13405 0.38 -0.0
Or see this region's nucleotide sequence