Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13395

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13390 and ABID97_RS13395 are separated by 28 nucleotidesABID97_RS13395 and ABID97_RS13400 are separated by 8 nucleotidesABID97_RS13400 and ABID97_RS13405 are separated by 4 nucleotides ABID97_RS13390: ABID97_RS13390 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,788,559 to 2,790,034 _RS13390 ABID97_RS13395: ABID97_RS13395 - tripartite tricarboxylate transporter substrate-binding protein, at 2,790,063 to 2,791,031 _RS13395 ABID97_RS13400: ABID97_RS13400 - cupin domain-containing protein, at 2,791,040 to 2,791,621 _RS13400 ABID97_RS13405: ABID97_RS13405 - fumarylacetoacetate hydrolase family protein, at 2,791,626 to 2,792,615 _RS13405 Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -1 0 1at 2789.823 kb on - strand, within ABID97_RS13390at 2790.355 kb on - strand, within ABID97_RS13395at 2790.435 kb on + strand, within ABID97_RS13395at 2790.436 kb on - strand, within ABID97_RS13395at 2790.467 kb on - strand, within ABID97_RS13395at 2790.467 kb on - strand, within ABID97_RS13395at 2790.499 kb on - strand, within ABID97_RS13395at 2791.779 kb on + strand, within ABID97_RS13405at 2791.779 kb on + strand, within ABID97_RS13405at 2792.005 kb on + strand, within ABID97_RS13405

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,789,823 - ABID97_RS13390 0.86 +0.2
2,790,355 - ABID97_RS13395 0.30 -1.4
2,790,435 + ABID97_RS13395 0.38 -0.0
2,790,436 - ABID97_RS13395 0.38 +0.2
2,790,467 - ABID97_RS13395 0.42 -0.6
2,790,467 - ABID97_RS13395 0.42 +0.1
2,790,499 - ABID97_RS13395 0.45 -0.1
2,791,779 + ABID97_RS13405 0.15 -0.1
2,791,779 + ABID97_RS13405 0.15 -1.0
2,792,005 + ABID97_RS13405 0.38 -0.0

Or see this region's nucleotide sequence