Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12955

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12950 and ABID97_RS12955 are separated by 17 nucleotidesABID97_RS12955 and ABID97_RS12960 are separated by 4 nucleotides ABID97_RS12950: ABID97_RS12950 - type VI secretion system ATPase TssH, at 2,684,082 to 2,686,742 _RS12950 ABID97_RS12955: ABID97_RS12955 - type VI secretion system tip protein TssI/VgrG, at 2,686,760 to 2,689,810 _RS12955 ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045 _RS12960 Position (kb) 2686 2687 2688 2689 2690Strain fitness (log2 ratio) -1 0 1at 2686.203 kb on + strand, within ABID97_RS12950at 2687.115 kb on - strand, within ABID97_RS12955at 2687.228 kb on + strand, within ABID97_RS12955at 2687.229 kb on - strand, within ABID97_RS12955at 2687.297 kb on + strand, within ABID97_RS12955at 2687.297 kb on + strand, within ABID97_RS12955at 2687.298 kb on - strand, within ABID97_RS12955at 2687.487 kb on - strand, within ABID97_RS12955at 2688.627 kb on + strand, within ABID97_RS12955at 2688.988 kb on - strand, within ABID97_RS12955at 2690.169 kb on + strand, within ABID97_RS12960at 2690.283 kb on + strand, within ABID97_RS12960at 2690.349 kb on + strand, within ABID97_RS12960at 2690.350 kb on - strand, within ABID97_RS12960at 2690.350 kb on - strand, within ABID97_RS12960at 2690.440 kb on - strand, within ABID97_RS12960

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,686,203 + ABID97_RS12950 0.80 -0.6
2,687,115 - ABID97_RS12955 0.12 +0.5
2,687,228 + ABID97_RS12955 0.15 -1.2
2,687,229 - ABID97_RS12955 0.15 -0.0
2,687,297 + ABID97_RS12955 0.18 -0.5
2,687,297 + ABID97_RS12955 0.18 -0.4
2,687,298 - ABID97_RS12955 0.18 +0.6
2,687,487 - ABID97_RS12955 0.24 -0.4
2,688,627 + ABID97_RS12955 0.61 -0.3
2,688,988 - ABID97_RS12955 0.73 -0.4
2,690,169 + ABID97_RS12960 0.11 -0.4
2,690,283 + ABID97_RS12960 0.14 -1.1
2,690,349 + ABID97_RS12960 0.17 -1.7
2,690,350 - ABID97_RS12960 0.17 -0.2
2,690,350 - ABID97_RS12960 0.17 +0.7
2,690,440 - ABID97_RS12960 0.19 +0.1

Or see this region's nucleotide sequence