Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12950 and ABID97_RS12955 are separated by 17 nucleotides ABID97_RS12955 and ABID97_RS12960 are separated by 4 nucleotides
ABID97_RS12950: ABID97_RS12950 - type VI secretion system ATPase TssH, at 2,684,082 to 2,686,742
_RS12950
ABID97_RS12955: ABID97_RS12955 - type VI secretion system tip protein TssI/VgrG, at 2,686,760 to 2,689,810
_RS12955
ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045
_RS12960
Position (kb)
2686
2687
2688
2689
2690 Strain fitness (log2 ratio)
-1
0
1 at 2686.203 kb on + strand, within ABID97_RS12950 at 2687.115 kb on - strand, within ABID97_RS12955 at 2687.228 kb on + strand, within ABID97_RS12955 at 2687.229 kb on - strand, within ABID97_RS12955 at 2687.297 kb on + strand, within ABID97_RS12955 at 2687.297 kb on + strand, within ABID97_RS12955 at 2687.298 kb on - strand, within ABID97_RS12955 at 2687.487 kb on - strand, within ABID97_RS12955 at 2688.627 kb on + strand, within ABID97_RS12955 at 2688.988 kb on - strand, within ABID97_RS12955 at 2690.169 kb on + strand, within ABID97_RS12960 at 2690.283 kb on + strand, within ABID97_RS12960 at 2690.349 kb on + strand, within ABID97_RS12960 at 2690.350 kb on - strand, within ABID97_RS12960 at 2690.350 kb on - strand, within ABID97_RS12960 at 2690.440 kb on - strand, within ABID97_RS12960
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,686,203 + ABID97_RS12950 0.80 -0.6 2,687,115 - ABID97_RS12955 0.12 +0.5 2,687,228 + ABID97_RS12955 0.15 -1.2 2,687,229 - ABID97_RS12955 0.15 -0.0 2,687,297 + ABID97_RS12955 0.18 -0.5 2,687,297 + ABID97_RS12955 0.18 -0.4 2,687,298 - ABID97_RS12955 0.18 +0.6 2,687,487 - ABID97_RS12955 0.24 -0.4 2,688,627 + ABID97_RS12955 0.61 -0.3 2,688,988 - ABID97_RS12955 0.73 -0.4 2,690,169 + ABID97_RS12960 0.11 -0.4 2,690,283 + ABID97_RS12960 0.14 -1.1 2,690,349 + ABID97_RS12960 0.17 -1.7 2,690,350 - ABID97_RS12960 0.17 -0.2 2,690,350 - ABID97_RS12960 0.17 +0.7 2,690,440 - ABID97_RS12960 0.19 +0.1
Or see this region's nucleotide sequence