Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12805 and ABID97_RS12810 are separated by 8 nucleotides ABID97_RS12810 and ABID97_RS12815 are separated by 38 nucleotides ABID97_RS12815 and ABID97_RS12820 overlap by 4 nucleotides
ABID97_RS12805: ABID97_RS12805 - hypothetical protein, at 2,653,507 to 2,653,992
_RS12805
ABID97_RS12810: ABID97_RS12810 - ABC transporter ATP-binding protein, at 2,654,001 to 2,654,714
_RS12810
ABID97_RS12815: ABID97_RS12815 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,654,753 to 2,655,763
_RS12815
ABID97_RS12820: ABID97_RS12820 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,655,760 to 2,656,938
_RS12820
Position (kb)
2654
2655
2656 Strain fitness (log2 ratio)
-1
0
1 at 2653.834 kb on + strand, within ABID97_RS12805 at 2653.835 kb on - strand, within ABID97_RS12805 at 2653.942 kb on + strand, within ABID97_RS12805 at 2653.958 kb on + strand at 2655.122 kb on + strand, within ABID97_RS12815 at 2655.122 kb on + strand, within ABID97_RS12815 at 2655.123 kb on - strand, within ABID97_RS12815 at 2655.123 kb on - strand, within ABID97_RS12815 at 2655.123 kb on - strand at 2655.248 kb on + strand, within ABID97_RS12815 at 2655.248 kb on + strand, within ABID97_RS12815 at 2655.651 kb on - strand, within ABID97_RS12815 at 2656.454 kb on - strand, within ABID97_RS12820
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,653,834 + ABID97_RS12805 0.67 -0.5 2,653,835 - ABID97_RS12805 0.67 -1.0 2,653,942 + ABID97_RS12805 0.90 -0.7 2,653,958 + -0.8 2,655,122 + ABID97_RS12815 0.36 -0.5 2,655,122 + ABID97_RS12815 0.36 -0.9 2,655,123 - ABID97_RS12815 0.37 -0.5 2,655,123 - ABID97_RS12815 0.37 -1.2 2,655,123 - +0.8 2,655,248 + ABID97_RS12815 0.49 -0.7 2,655,248 + ABID97_RS12815 0.49 -0.9 2,655,651 - ABID97_RS12815 0.89 +0.8 2,656,454 - ABID97_RS12820 0.59 -0.3
Or see this region's nucleotide sequence