Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05125

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05115 and ABID97_RS05120 are separated by 41 nucleotidesABID97_RS05120 and ABID97_RS05125 are separated by 16 nucleotidesABID97_RS05125 and ABID97_RS05130 are separated by 27 nucleotidesABID97_RS05130 and ABID97_RS05135 are separated by 6 nucleotidesABID97_RS05135 and ABID97_RS05140 are separated by 76 nucleotides ABID97_RS05115: ABID97_RS05115 - hypothetical protein, at 1,080,593 to 1,081,072 _RS05115 ABID97_RS05120: ABID97_RS05120 - hypothetical protein, at 1,081,114 to 1,081,608 _RS05120 ABID97_RS05125: ABID97_RS05125 - DUF2169 domain-containing protein, at 1,081,625 to 1,082,704 _RS05125 ABID97_RS05130: ABID97_RS05130 - hypothetical protein, at 1,082,732 to 1,082,938 _RS05130 ABID97_RS05135: ABID97_RS05135 - hypothetical protein, at 1,082,945 to 1,083,616 _RS05135 ABID97_RS05140: ABID97_RS05140 - hypothetical protein, at 1,083,693 to 1,083,938 _RS05140 Position (kb) 1081 1082 1083Strain fitness (log2 ratio) -1 0 1at 1081.127 kb on - strandat 1082.528 kb on + strand, within ABID97_RS05125at 1082.528 kb on + strand, within ABID97_RS05125at 1082.734 kb on - strandat 1082.946 kb on + strandat 1082.947 kb on - strandat 1083.654 kb on + strandat 1083.655 kb on - strandat 1083.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,081,127 - -0.0
1,082,528 + ABID97_RS05125 0.84 -0.8
1,082,528 + ABID97_RS05125 0.84 -0.6
1,082,734 - +0.6
1,082,946 + +0.2
1,082,947 - +0.1
1,083,654 + -0.2
1,083,655 - +0.2
1,083,655 - +0.2

Or see this region's nucleotide sequence