Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05115 and ABID97_RS05120 are separated by 41 nucleotides ABID97_RS05120 and ABID97_RS05125 are separated by 16 nucleotides ABID97_RS05125 and ABID97_RS05130 are separated by 27 nucleotides ABID97_RS05130 and ABID97_RS05135 are separated by 6 nucleotides ABID97_RS05135 and ABID97_RS05140 are separated by 76 nucleotides
ABID97_RS05115: ABID97_RS05115 - hypothetical protein, at 1,080,593 to 1,081,072
_RS05115
ABID97_RS05120: ABID97_RS05120 - hypothetical protein, at 1,081,114 to 1,081,608
_RS05120
ABID97_RS05125: ABID97_RS05125 - DUF2169 domain-containing protein, at 1,081,625 to 1,082,704
_RS05125
ABID97_RS05130: ABID97_RS05130 - hypothetical protein, at 1,082,732 to 1,082,938
_RS05130
ABID97_RS05135: ABID97_RS05135 - hypothetical protein, at 1,082,945 to 1,083,616
_RS05135
ABID97_RS05140: ABID97_RS05140 - hypothetical protein, at 1,083,693 to 1,083,938
_RS05140
Position (kb)
1081
1082
1083 Strain fitness (log2 ratio)
-1
0
1 at 1081.127 kb on - strand at 1082.528 kb on + strand, within ABID97_RS05125 at 1082.528 kb on + strand, within ABID97_RS05125 at 1082.734 kb on - strand at 1082.946 kb on + strand at 1082.947 kb on - strand at 1083.654 kb on + strand at 1083.655 kb on - strand at 1083.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,081,127 - -0.0 1,082,528 + ABID97_RS05125 0.84 -0.8 1,082,528 + ABID97_RS05125 0.84 -0.6 1,082,734 - +0.6 1,082,946 + +0.2 1,082,947 - +0.1 1,083,654 + -0.2 1,083,655 - +0.2 1,083,655 - +0.2
Or see this region's nucleotide sequence