Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04400 and ABID97_RS04405 overlap by 4 nucleotides ABID97_RS04405 and ABID97_RS04410 are separated by 43 nucleotides
ABID97_RS04400: ABID97_RS04400 - DUF5682 family protein, at 908,790 to 911,354
_RS04400
ABID97_RS04405: ABID97_RS04405 - FxLYD domain-containing protein, at 911,351 to 913,033
_RS04405
ABID97_RS04410: ABID97_RS04410 - LLM class flavin-dependent oxidoreductase, at 913,077 to 914,063
_RS04410
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -1
0
1 at 910.894 kb on - strand, within ABID97_RS04400 at 910.894 kb on - strand, within ABID97_RS04400 at 911.221 kb on - strand at 911.427 kb on - strand at 911.840 kb on + strand, within ABID97_RS04405 at 911.840 kb on + strand, within ABID97_RS04405 at 911.991 kb on - strand, within ABID97_RS04405 at 912.137 kb on + strand, within ABID97_RS04405 at 912.284 kb on + strand, within ABID97_RS04405 at 912.285 kb on - strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.492 kb on - strand, within ABID97_RS04405 at 912.492 kb on - strand, within ABID97_RS04405 at 912.608 kb on + strand, within ABID97_RS04405 at 912.608 kb on + strand, within ABID97_RS04405 at 912.609 kb on - strand, within ABID97_RS04405 at 912.614 kb on + strand, within ABID97_RS04405 at 913.031 kb on + strand at 913.031 kb on + strand at 913.031 kb on + strand at 913.032 kb on - strand at 913.369 kb on - strand, within ABID97_RS04410 at 913.620 kb on + strand, within ABID97_RS04410 at 913.674 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 914.028 kb on + strand at 914.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 910,894 - ABID97_RS04400 0.82 -0.4 910,894 - ABID97_RS04400 0.82 -0.1 911,221 - +0.3 911,427 - -0.0 911,840 + ABID97_RS04405 0.29 +0.3 911,840 + ABID97_RS04405 0.29 -0.8 911,991 - ABID97_RS04405 0.38 +0.0 912,137 + ABID97_RS04405 0.47 -0.9 912,284 + ABID97_RS04405 0.55 +0.0 912,285 - ABID97_RS04405 0.55 -0.7 912,491 + ABID97_RS04405 0.68 -1.2 912,491 + ABID97_RS04405 0.68 -0.6 912,491 + ABID97_RS04405 0.68 -0.1 912,491 + ABID97_RS04405 0.68 -0.8 912,492 - ABID97_RS04405 0.68 +0.2 912,492 - ABID97_RS04405 0.68 -0.8 912,608 + ABID97_RS04405 0.75 -0.2 912,608 + ABID97_RS04405 0.75 +0.4 912,609 - ABID97_RS04405 0.75 +0.4 912,614 + ABID97_RS04405 0.75 +0.2 913,031 + +0.1 913,031 + -0.8 913,031 + +1.0 913,032 - +0.4 913,369 - ABID97_RS04410 0.30 +0.1 913,620 + ABID97_RS04410 0.55 -0.8 913,674 + ABID97_RS04410 0.60 -0.9 913,716 + ABID97_RS04410 0.65 -0.3 913,716 + ABID97_RS04410 0.65 +0.1 913,717 - ABID97_RS04410 0.65 -0.0 913,717 - ABID97_RS04410 0.65 +0.2 913,717 - ABID97_RS04410 0.65 -1.0 914,028 + +0.1 914,029 - -0.1
Or see this region's nucleotide sequence