Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01445 and ABID97_RS01450 overlap by 4 nucleotides ABID97_RS01450 and ABID97_RS01455 are separated by 86 nucleotides ABID97_RS01455 and ABID97_RS01460 are separated by 76 nucleotides ABID97_RS01460 and ABID97_RS01465 are separated by 18 nucleotides ABID97_RS01465 and ABID97_RS01470 are separated by 84 nucleotides
ABID97_RS01445: ABID97_RS01445 - AMP-binding protein, at 292,519 to 294,144
_RS01445
ABID97_RS01450: ABID97_RS01450 - RidA family protein, at 294,141 to 294,539
_RS01450
ABID97_RS01455: ABID97_RS01455 - AacA4 family aminoglycoside N(6')-acetyltransferase, at 294,626 to 295,183
_RS01455
ABID97_RS01460: ABID97_RS01460 - tRNA-Met, at 295,260 to 295,336
_RS01460
ABID97_RS01465: ABID97_RS01465 - 50S ribosomal protein L17, at 295,355 to 295,753
_RS01465
ABID97_RS01470: ABID97_RS01470 - DNA-directed RNA polymerase subunit alpha, at 295,838 to 296,827
_RS01470
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 293.740 kb on + strand, within ABID97_RS01445 at 293.740 kb on + strand, within ABID97_RS01445 at 293.761 kb on + strand, within ABID97_RS01445 at 293.797 kb on + strand, within ABID97_RS01445 at 293.797 kb on + strand, within ABID97_RS01445 at 293.806 kb on + strand, within ABID97_RS01445 at 293.846 kb on - strand, within ABID97_RS01445 at 293.846 kb on - strand, within ABID97_RS01445 at 294.678 kb on + strand at 294.678 kb on + strand at 294.678 kb on + strand at 294.678 kb on + strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.738 kb on + strand, within ABID97_RS01455 at 294.951 kb on + strand, within ABID97_RS01455 at 294.951 kb on + strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.996 kb on + strand, within ABID97_RS01455 at 294.996 kb on + strand, within ABID97_RS01455 at 294.997 kb on - strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.060 kb on + strand, within ABID97_RS01455 at 295.061 kb on - strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.256 kb on - strand at 295.256 kb on - strand at 295.256 kb on - strand at 295.352 kb on - strand at 295.352 kb on - strand at 295.352 kb on - strand at 295.391 kb on - strand at 295.775 kb on - strand at 295.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 293,740 + ABID97_RS01445 0.75 +0.1 293,740 + ABID97_RS01445 0.75 -0.0 293,761 + ABID97_RS01445 0.76 +0.7 293,797 + ABID97_RS01445 0.79 +0.8 293,797 + ABID97_RS01445 0.79 +0.1 293,806 + ABID97_RS01445 0.79 -0.7 293,846 - ABID97_RS01445 0.82 +0.4 293,846 - ABID97_RS01445 0.82 +2.1 294,678 + -0.9 294,678 + -2.2 294,678 + +3.1 294,678 + -0.9 294,679 - -1.6 294,679 - -0.9 294,679 - -1.6 294,679 - -1.0 294,679 - -0.5 294,679 - -0.8 294,738 + ABID97_RS01455 0.20 -1.2 294,951 + ABID97_RS01455 0.58 -2.1 294,951 + ABID97_RS01455 0.58 -3.6 294,952 - ABID97_RS01455 0.58 -1.0 294,952 - ABID97_RS01455 0.58 -0.8 294,952 - ABID97_RS01455 0.58 -2.1 294,996 + ABID97_RS01455 0.66 -1.9 294,996 + ABID97_RS01455 0.66 -1.4 294,997 - ABID97_RS01455 0.66 -0.7 295,035 + ABID97_RS01455 0.73 -1.6 295,035 + ABID97_RS01455 0.73 -3.0 295,035 + ABID97_RS01455 0.73 -2.0 295,035 + ABID97_RS01455 0.73 -1.3 295,036 - ABID97_RS01455 0.73 -0.7 295,036 - ABID97_RS01455 0.73 -1.1 295,036 - ABID97_RS01455 0.73 -0.5 295,060 + ABID97_RS01455 0.78 -1.6 295,061 - ABID97_RS01455 0.78 -1.0 295,126 + ABID97_RS01455 0.90 -1.4 295,126 + ABID97_RS01455 0.90 -1.2 295,126 + ABID97_RS01455 0.90 -1.5 295,126 + ABID97_RS01455 0.90 -0.6 295,126 + ABID97_RS01455 0.90 +1.1 295,127 - ABID97_RS01455 0.90 -1.4 295,127 - ABID97_RS01455 0.90 -0.2 295,127 - ABID97_RS01455 0.90 -1.7 295,127 - ABID97_RS01455 0.90 -1.3 295,256 - -1.8 295,256 - +0.3 295,256 - -0.0 295,352 - +1.2 295,352 - +0.4 295,352 - -0.3 295,391 - +0.2 295,775 - +0.4 295,796 - +1.7
Or see this region's nucleotide sequence