Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00960

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00950 and ABID97_RS00955 are separated by 268 nucleotidesABID97_RS00955 and ABID97_RS00960 are separated by 19 nucleotidesABID97_RS00960 and ABID97_RS00965 are separated by 134 nucleotides ABID97_RS00950: ABID97_RS00950 - ABC transporter substrate-binding protein, at 192,142 to 193,188 _RS00950 ABID97_RS00955: ABID97_RS00955 - aquaporin Z, at 193,457 to 194,167 _RS00955 ABID97_RS00960: ABID97_RS00960 - hypothetical protein, at 194,187 to 194,525 _RS00960 ABID97_RS00965: ABID97_RS00965 - ATP-binding protein, at 194,660 to 196,048 _RS00965 Position (kb) 194 195Strain fitness (log2 ratio) -1 0 1at 193.396 kb on + strandat 193.396 kb on + strandat 193.397 kb on - strandat 193.397 kb on - strandat 193.397 kb on - strandat 193.472 kb on + strandat 193.472 kb on + strandat 193.473 kb on - strandat 193.473 kb on - strandat 193.626 kb on - strand, within ABID97_RS00955at 193.770 kb on - strand, within ABID97_RS00955at 193.827 kb on - strand, within ABID97_RS00955at 193.851 kb on - strand, within ABID97_RS00955at 194.132 kb on + strandat 194.269 kb on + strand, within ABID97_RS00960at 194.269 kb on + strand, within ABID97_RS00960at 194.269 kb on + strand, within ABID97_RS00960at 194.270 kb on - strand, within ABID97_RS00960at 194.425 kb on + strand, within ABID97_RS00960

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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193,396 + +0.3
193,396 + -0.1
193,397 - -0.2
193,397 - +0.3
193,397 - +0.3
193,472 + +0.8
193,472 + +0.9
193,473 - -0.0
193,473 - -1.1
193,626 - ABID97_RS00955 0.24 +1.1
193,770 - ABID97_RS00955 0.44 -0.4
193,827 - ABID97_RS00955 0.52 -0.8
193,851 - ABID97_RS00955 0.55 -0.1
194,132 + +0.7
194,269 + ABID97_RS00960 0.24 +0.1
194,269 + ABID97_RS00960 0.24 -0.2
194,269 + ABID97_RS00960 0.24 -0.9
194,270 - ABID97_RS00960 0.24 -0.2
194,425 + ABID97_RS00960 0.70 -0.8

Or see this region's nucleotide sequence