Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00945 and ABID97_RS00950 are separated by 124 nucleotides ABID97_RS00950 and ABID97_RS00955 are separated by 268 nucleotides ABID97_RS00955 and ABID97_RS00960 are separated by 19 nucleotides
ABID97_RS00945: ABID97_RS00945 - molecular chaperone HtpG, at 189,981 to 192,017
_RS00945
ABID97_RS00950: ABID97_RS00950 - ABC transporter substrate-binding protein, at 192,142 to 193,188
_RS00950
ABID97_RS00955: ABID97_RS00955 - aquaporin Z, at 193,457 to 194,167
_RS00955
ABID97_RS00960: ABID97_RS00960 - hypothetical protein, at 194,187 to 194,525
_RS00960
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1 at 191.152 kb on + strand, within ABID97_RS00945 at 191.152 kb on + strand, within ABID97_RS00945 at 191.152 kb on + strand, within ABID97_RS00945 at 191.152 kb on + strand, within ABID97_RS00945 at 191.152 kb on + strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.153 kb on - strand, within ABID97_RS00945 at 191.218 kb on + strand, within ABID97_RS00945 at 191.218 kb on + strand, within ABID97_RS00945 at 191.219 kb on - strand, within ABID97_RS00945 at 191.219 kb on - strand, within ABID97_RS00945 at 191.240 kb on - strand, within ABID97_RS00945 at 191.240 kb on - strand, within ABID97_RS00945 at 191.413 kb on + strand, within ABID97_RS00945 at 191.413 kb on + strand, within ABID97_RS00945 at 191.414 kb on - strand, within ABID97_RS00945 at 191.414 kb on - strand, within ABID97_RS00945 at 191.452 kb on + strand, within ABID97_RS00945 at 191.629 kb on + strand, within ABID97_RS00945 at 191.630 kb on - strand, within ABID97_RS00945 at 191.708 kb on + strand, within ABID97_RS00945 at 191.709 kb on - strand, within ABID97_RS00945 at 191.709 kb on - strand, within ABID97_RS00945 at 191.843 kb on - strand at 191.938 kb on + strand at 191.938 kb on + strand at 192.029 kb on + strand at 192.029 kb on + strand at 192.029 kb on + strand at 192.030 kb on - strand at 192.030 kb on - strand at 192.030 kb on - strand at 192.030 kb on - strand at 192.030 kb on - strand at 192.213 kb on - strand at 192.227 kb on + strand at 192.356 kb on + strand, within ABID97_RS00950 at 192.357 kb on - strand, within ABID97_RS00950 at 192.357 kb on - strand, within ABID97_RS00950 at 192.561 kb on - strand, within ABID97_RS00950 at 192.561 kb on - strand, within ABID97_RS00950 at 192.561 kb on - strand, within ABID97_RS00950 at 192.647 kb on + strand, within ABID97_RS00950 at 192.647 kb on + strand, within ABID97_RS00950 at 192.647 kb on + strand, within ABID97_RS00950 at 192.647 kb on + strand, within ABID97_RS00950 at 192.676 kb on + strand, within ABID97_RS00950 at 192.792 kb on - strand, within ABID97_RS00950 at 192.860 kb on + strand, within ABID97_RS00950 at 192.860 kb on + strand, within ABID97_RS00950 at 193.018 kb on - strand, within ABID97_RS00950 at 193.396 kb on + strand at 193.396 kb on + strand at 193.397 kb on - strand at 193.397 kb on - strand at 193.397 kb on - strand at 193.472 kb on + strand at 193.472 kb on + strand at 193.473 kb on - strand at 193.473 kb on - strand at 193.626 kb on - strand, within ABID97_RS00955 at 193.770 kb on - strand, within ABID97_RS00955 at 193.827 kb on - strand, within ABID97_RS00955 at 193.851 kb on - strand, within ABID97_RS00955 at 194.132 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 191,152 + ABID97_RS00945 0.57 +0.4 191,152 + ABID97_RS00945 0.57 +0.1 191,152 + ABID97_RS00945 0.57 +0.3 191,152 + ABID97_RS00945 0.57 +0.1 191,152 + ABID97_RS00945 0.57 +0.9 191,153 - ABID97_RS00945 0.58 +0.0 191,153 - ABID97_RS00945 0.58 +0.0 191,153 - ABID97_RS00945 0.58 +0.3 191,153 - ABID97_RS00945 0.58 +0.1 191,153 - ABID97_RS00945 0.58 -0.1 191,153 - ABID97_RS00945 0.58 +0.5 191,218 + ABID97_RS00945 0.61 +0.4 191,218 + ABID97_RS00945 0.61 +0.2 191,219 - ABID97_RS00945 0.61 +0.5 191,219 - ABID97_RS00945 0.61 +0.2 191,240 - ABID97_RS00945 0.62 +0.1 191,240 - ABID97_RS00945 0.62 +1.0 191,413 + ABID97_RS00945 0.70 +0.6 191,413 + ABID97_RS00945 0.70 +0.3 191,414 - ABID97_RS00945 0.70 +0.5 191,414 - ABID97_RS00945 0.70 +0.4 191,452 + ABID97_RS00945 0.72 +0.5 191,629 + ABID97_RS00945 0.81 +0.5 191,630 - ABID97_RS00945 0.81 +0.2 191,708 + ABID97_RS00945 0.85 +0.3 191,709 - ABID97_RS00945 0.85 -0.6 191,709 - ABID97_RS00945 0.85 +1.7 191,843 - +0.6 191,938 + +0.1 191,938 + -0.0 192,029 + +0.2 192,029 + +0.3 192,029 + +0.1 192,030 - +0.0 192,030 - -0.1 192,030 - +1.1 192,030 - +0.2 192,030 - -0.4 192,213 - -0.1 192,227 + -0.1 192,356 + ABID97_RS00950 0.20 -0.1 192,357 - ABID97_RS00950 0.21 -0.1 192,357 - ABID97_RS00950 0.21 +0.1 192,561 - ABID97_RS00950 0.40 -0.3 192,561 - ABID97_RS00950 0.40 -0.3 192,561 - ABID97_RS00950 0.40 +0.5 192,647 + ABID97_RS00950 0.48 -0.0 192,647 + ABID97_RS00950 0.48 -0.1 192,647 + ABID97_RS00950 0.48 -0.0 192,647 + ABID97_RS00950 0.48 -2.5 192,676 + ABID97_RS00950 0.51 +0.3 192,792 - ABID97_RS00950 0.62 -0.5 192,860 + ABID97_RS00950 0.69 -0.0 192,860 + ABID97_RS00950 0.69 -0.8 193,018 - ABID97_RS00950 0.84 -0.0 193,396 + +0.3 193,396 + -0.1 193,397 - -0.2 193,397 - +0.3 193,397 - +0.3 193,472 + +0.8 193,472 + +0.9 193,473 - -0.0 193,473 - -1.1 193,626 - ABID97_RS00955 0.24 +1.1 193,770 - ABID97_RS00955 0.44 -0.4 193,827 - ABID97_RS00955 0.52 -0.8 193,851 - ABID97_RS00955 0.55 -0.1 194,132 + +0.7
Or see this region's nucleotide sequence