Strain Fitness in Escherichia coli BW25113 around b2944

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalP and sprT are separated by 76 nucleotidessprT and endA are separated by 94 nucleotidesendA and yggJ are separated by 79 nucleotides b2943: galP - galactose:H+ symporter (galP) (from data), at 3,086,306 to 3,087,700 galP b2944: sprT - hypothetical protein (NCBI), at 3,087,777 to 3,088,274 sprT b2945: endA - DNA-specific endonuclease I (NCBI), at 3,088,369 to 3,089,076 endA b2946: yggJ - orf, hypothetical protein (VIMSS), at 3,089,156 to 3,089,887 yggJ Position (kb) 3087 3088 3089Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 3086.780 kb on - strand, within galPat 3086.780 kb on - strand, within galPat 3086.797 kb on + strand, within galPat 3086.886 kb on + strand, within galPat 3086.886 kb on + strand, within galPat 3086.896 kb on - strand, within galPat 3086.924 kb on + strand, within galPat 3086.980 kb on + strand, within galPat 3087.004 kb on + strand, within galPat 3087.004 kb on + strand, within galPat 3087.028 kb on + strand, within galPat 3087.028 kb on + strand, within galPat 3087.061 kb on + strand, within galPat 3087.084 kb on - strand, within galPat 3087.102 kb on + strand, within galPat 3087.102 kb on + strand, within galPat 3087.156 kb on - strand, within galPat 3087.156 kb on - strand, within galPat 3087.183 kb on - strand, within galPat 3087.194 kb on + strand, within galPat 3087.194 kb on + strand, within galPat 3087.217 kb on + strand, within galPat 3087.241 kb on + strand, within galPat 3087.241 kb on + strand, within galPat 3087.261 kb on + strand, within galPat 3087.266 kb on + strand, within galPat 3087.266 kb on + strand, within galPat 3087.277 kb on + strand, within galPat 3087.307 kb on + strand, within galPat 3087.310 kb on - strand, within galPat 3087.315 kb on - strand, within galPat 3087.376 kb on - strand, within galPat 3087.414 kb on + strand, within galPat 3087.451 kb on - strand, within galPat 3087.451 kb on - strand, within galPat 3087.517 kb on + strand, within galPat 3087.517 kb on + strand, within galPat 3087.523 kb on - strand, within galPat 3087.525 kb on - strand, within galPat 3087.537 kb on - strand, within galPat 3087.572 kb on + strandat 3087.600 kb on + strandat 3087.704 kb on + strandat 3087.739 kb on - strandat 3087.759 kb on + strandat 3087.759 kb on + strandat 3087.802 kb on - strandat 3087.872 kb on - strand, within sprTat 3087.872 kb on - strand, within sprTat 3087.877 kb on - strand, within sprTat 3087.890 kb on + strand, within sprTat 3087.892 kb on + strand, within sprTat 3087.892 kb on + strand, within sprTat 3087.898 kb on - strand, within sprTat 3087.898 kb on - strand, within sprTat 3087.928 kb on + strand, within sprTat 3087.928 kb on + strand, within sprTat 3087.950 kb on + strand, within sprTat 3087.999 kb on + strand, within sprTat 3088.001 kb on - strandat 3088.001 kb on - strand, within sprTat 3088.048 kb on + strand, within sprTat 3088.048 kb on + strand, within sprTat 3088.099 kb on + strand, within sprTat 3088.350 kb on + strandat 3088.350 kb on + strandat 3088.406 kb on - strandat 3088.406 kb on - strandat 3088.453 kb on + strand, within endAat 3088.619 kb on - strand, within endAat 3088.683 kb on - strand, within endAat 3088.724 kb on + strand, within endAat 3088.732 kb on - strand, within endAat 3088.732 kb on - strand, within endAat 3088.875 kb on - strand, within endAat 3088.885 kb on - strand, within endAat 3088.962 kb on + strand, within endAat 3088.962 kb on + strand, within endAat 3088.962 kb on + strand, within endAat 3088.970 kb on - strand, within endAat 3088.970 kb on - strand, within endAat 3089.020 kb on - strandat 3089.038 kb on - strandat 3089.038 kb on - strandat 3089.038 kb on - strandat 3089.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,086,780 - galP b2943 0.34 +0.2
3,086,780 - galP b2943 0.34 +0.0
3,086,797 + galP b2943 0.35 +0.5
3,086,886 + galP b2943 0.42 +0.1
3,086,886 + galP b2943 0.42 -0.3
3,086,896 - galP b2943 0.42 -0.1
3,086,924 + galP b2943 0.44 -1.0
3,086,980 + galP b2943 0.48 -0.6
3,087,004 + galP b2943 0.50 +0.6
3,087,004 + galP b2943 0.50 -0.0
3,087,028 + galP b2943 0.52 -1.1
3,087,028 + galP b2943 0.52 +1.3
3,087,061 + galP b2943 0.54 +1.6
3,087,084 - galP b2943 0.56 -1.4
3,087,102 + galP b2943 0.57 -0.7
3,087,102 + galP b2943 0.57 +2.1
3,087,156 - galP b2943 0.61 -0.1
3,087,156 - galP b2943 0.61 -1.7
3,087,183 - galP b2943 0.63 -0.4
3,087,194 + galP b2943 0.64 +0.6
3,087,194 + galP b2943 0.64 +1.0
3,087,217 + galP b2943 0.65 -0.1
3,087,241 + galP b2943 0.67 +0.5
3,087,241 + galP b2943 0.67 -0.2
3,087,261 + galP b2943 0.68 +0.7
3,087,266 + galP b2943 0.69 -0.5
3,087,266 + galP b2943 0.69 +0.4
3,087,277 + galP b2943 0.70 -0.7
3,087,307 + galP b2943 0.72 +0.0
3,087,310 - galP b2943 0.72 -0.3
3,087,315 - galP b2943 0.72 +0.4
3,087,376 - galP b2943 0.77 +0.9
3,087,414 + galP b2943 0.79 -0.4
3,087,451 - galP b2943 0.82 +0.0
3,087,451 - galP b2943 0.82 +0.5
3,087,517 + galP b2943 0.87 +1.1
3,087,517 + galP b2943 0.87 +0.8
3,087,523 - galP b2943 0.87 +0.4
3,087,525 - galP b2943 0.87 -0.5
3,087,537 - galP b2943 0.88 +0.2
3,087,572 + +0.2
3,087,600 + +0.3
3,087,704 + +3.1
3,087,739 - -3.0
3,087,759 + +1.5
3,087,759 + +0.1
3,087,802 - +0.9
3,087,872 - sprT b2944 0.19 -0.2
3,087,872 - sprT b2944 0.19 +0.3
3,087,877 - sprT b2944 0.20 -0.5
3,087,890 + sprT b2944 0.23 +0.0
3,087,892 + sprT b2944 0.23 -0.6
3,087,892 + sprT b2944 0.23 -0.2
3,087,898 - sprT b2944 0.24 +9.5
3,087,898 - sprT b2944 0.24 +9.6
3,087,928 + sprT b2944 0.30 -0.0
3,087,928 + sprT b2944 0.30 -0.3
3,087,950 + sprT b2944 0.35 +0.6
3,087,999 + sprT b2944 0.45 -1.2
3,088,001 - +2.0
3,088,001 - sprT b2944 0.45 +0.6
3,088,048 + sprT b2944 0.54 +1.1
3,088,048 + sprT b2944 0.54 +0.5
3,088,099 + sprT b2944 0.65 +1.0
3,088,350 + +0.4
3,088,350 + +1.5
3,088,406 - +0.7
3,088,406 - +0.0
3,088,453 + endA b2945 0.12 -0.7
3,088,619 - endA b2945 0.35 +0.1
3,088,683 - endA b2945 0.44 -0.1
3,088,724 + endA b2945 0.50 -0.2
3,088,732 - endA b2945 0.51 +1.1
3,088,732 - endA b2945 0.51 +0.3
3,088,875 - endA b2945 0.71 -0.0
3,088,885 - endA b2945 0.73 +0.1
3,088,962 + endA b2945 0.84 -0.4
3,088,962 + endA b2945 0.84 +0.5
3,088,962 + endA b2945 0.84 +0.5
3,088,970 - endA b2945 0.85 -0.1
3,088,970 - endA b2945 0.85 -0.6
3,089,020 - -0.2
3,089,038 - -0.3
3,089,038 - -0.4
3,089,038 - -0.3
3,089,191 + -0.3

Or see this region's nucleotide sequence