Strain Fitness in Escherichia coli BW25113 around b2507

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfgH and yfgI are separated by 15 nucleotidesyfgI and guaA are separated by 92 nucleotidesguaA and guaB are separated by 68 nucleotides b2505: yfgH - predicted outer membrane lipoprotein (NCBI), at 2,627,814 to 2,628,332 yfgH b2506: yfgI - hypothetical protein (NCBI), at 2,628,348 to 2,628,887 yfgI b2507: guaA - bifunctional GMP synthase/glutamine amidotransferase protein (NCBI), at 2,628,980 to 2,630,557 guaA b2508: guaB - inositol-5-monophosphate dehydrogenase (NCBI), at 2,630,626 to 2,632,092 guaB Position (kb) 2628 2629 2630 2631Strain fitness (log2 ratio) -2 -1 0 1at 2627.996 kb on - strand, within yfgHat 2628.036 kb on + strand, within yfgHat 2628.056 kb on - strand, within yfgHat 2628.058 kb on + strand, within yfgHat 2628.060 kb on + strand, within yfgHat 2628.067 kb on + strand, within yfgHat 2628.068 kb on - strand, within yfgHat 2628.109 kb on - strand, within yfgHat 2628.109 kb on - strand, within yfgHat 2628.114 kb on - strand, within yfgHat 2628.126 kb on + strand, within yfgHat 2628.145 kb on + strand, within yfgHat 2628.178 kb on - strand, within yfgHat 2628.196 kb on - strand, within yfgHat 2628.202 kb on + strand, within yfgHat 2628.210 kb on + strand, within yfgHat 2628.210 kb on + strand, within yfgHat 2628.212 kb on + strand, within yfgHat 2628.217 kb on + strand, within yfgHat 2628.225 kb on - strand, within yfgHat 2628.227 kb on + strand, within yfgHat 2628.230 kb on - strand, within yfgHat 2628.255 kb on + strand, within yfgHat 2628.267 kb on + strand, within yfgHat 2628.316 kb on + strandat 2628.316 kb on + strandat 2628.381 kb on + strandat 2628.381 kb on + strandat 2628.562 kb on + strand, within yfgIat 2628.675 kb on - strand, within yfgIat 2628.763 kb on - strand, within yfgIat 2628.788 kb on - strand, within yfgIat 2628.788 kb on - strand, within yfgIat 2628.938 kb on + strandat 2628.972 kb on - strandat 2630.612 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,627,996 - yfgH b2505 0.35 -2.0
2,628,036 + yfgH b2505 0.43 -1.2
2,628,056 - yfgH b2505 0.47 -1.2
2,628,058 + yfgH b2505 0.47 +0.8
2,628,060 + yfgH b2505 0.47 -0.5
2,628,067 + yfgH b2505 0.49 -1.1
2,628,068 - yfgH b2505 0.49 -0.3
2,628,109 - yfgH b2505 0.57 +0.8
2,628,109 - yfgH b2505 0.57 +0.2
2,628,114 - yfgH b2505 0.58 -1.3
2,628,126 + yfgH b2505 0.60 +0.8
2,628,145 + yfgH b2505 0.64 -1.9
2,628,178 - yfgH b2505 0.70 +0.2
2,628,196 - yfgH b2505 0.74 +0.0
2,628,202 + yfgH b2505 0.75 +0.5
2,628,210 + yfgH b2505 0.76 +1.3
2,628,210 + yfgH b2505 0.76 -1.3
2,628,212 + yfgH b2505 0.77 -0.0
2,628,217 + yfgH b2505 0.78 +0.7
2,628,225 - yfgH b2505 0.79 +0.6
2,628,227 + yfgH b2505 0.80 +0.5
2,628,230 - yfgH b2505 0.80 -0.1
2,628,255 + yfgH b2505 0.85 +0.6
2,628,267 + yfgH b2505 0.87 -0.7
2,628,316 + -0.1
2,628,316 + -0.2
2,628,381 + +0.4
2,628,381 + +0.7
2,628,562 + yfgI b2506 0.40 +1.4
2,628,675 - yfgI b2506 0.61 -0.3
2,628,763 - yfgI b2506 0.77 +0.0
2,628,788 - yfgI b2506 0.81 +0.1
2,628,788 - yfgI b2506 0.81 -0.8
2,628,938 + +1.6
2,628,972 - -0.6
2,630,612 - -0.6

Or see this region's nucleotide sequence