Strain Fitness in Escherichia coli BW25113 around b2306
Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Arginine (N) |
---|---|---|---|---|---|
remove | |||||
2,420,758 | - | +0.1 | |||
2,420,758 | - | +1.3 | |||
2,420,772 | + | yfcI | b2305 | 0.11 | +0.5 |
2,420,775 | - | yfcI | b2305 | 0.12 | +0.3 |
2,420,775 | - | yfcI | b2305 | 0.12 | -1.2 |
2,420,784 | - | yfcI | b2305 | 0.13 | +0.5 |
2,420,801 | - | yfcI | b2305 | 0.15 | +0.4 |
2,420,932 | + | yfcI | b2305 | 0.29 | +0.2 |
2,420,932 | + | yfcI | b2305 | 0.29 | -0.9 |
2,420,953 | - | yfcI | b2305 | 0.32 | +0.3 |
2,420,966 | - | yfcI | b2305 | 0.33 | -1.3 |
2,420,987 | + | yfcI | b2305 | 0.35 | +0.3 |
2,420,990 | + | yfcI | b2305 | 0.36 | +0.6 |
2,420,990 | + | +0.8 | |||
2,420,990 | + | yfcI | b2305 | 0.36 | +0.9 |
2,420,998 | - | yfcI | b2305 | 0.37 | -0.1 |
2,421,000 | - | yfcI | b2305 | 0.37 | +0.2 |
2,421,008 | - | yfcI | b2305 | 0.38 | -0.6 |
2,421,052 | + | yfcI | b2305 | 0.43 | -0.2 |
2,421,052 | - | yfcI | b2305 | 0.43 | +0.1 |
2,421,054 | + | yfcI | b2305 | 0.43 | +0.8 |
2,421,054 | + | yfcI | b2305 | 0.43 | -0.9 |
2,421,055 | - | yfcI | b2305 | 0.43 | -0.2 |
2,421,057 | + | yfcI | b2305 | 0.43 | +0.8 |
2,421,060 | - | yfcI | b2305 | 0.44 | +0.6 |
2,421,060 | - | yfcI | b2305 | 0.44 | +0.1 |
2,421,063 | - | yfcI | b2305 | 0.44 | +0.3 |
2,421,063 | - | yfcI | b2305 | 0.44 | -0.6 |
2,421,075 | + | yfcI | b2305 | 0.45 | -2.1 |
2,421,075 | + | yfcI | b2305 | 0.45 | -0.7 |
2,421,089 | - | yfcI | b2305 | 0.47 | +0.1 |
2,421,089 | - | yfcI | b2305 | 0.47 | -1.2 |
2,421,129 | + | yfcI | b2305 | 0.51 | +0.3 |
2,421,134 | - | yfcI | b2305 | 0.52 | +0.6 |
2,421,146 | - | yfcI | b2305 | 0.53 | +0.3 |
2,421,178 | - | yfcI | b2305 | 0.57 | -2.5 |
2,421,179 | + | yfcI | b2305 | 0.57 | -0.1 |
2,421,179 | + | yfcI | b2305 | 0.57 | -0.5 |
2,421,210 | + | yfcI | b2305 | 0.60 | -0.5 |
2,421,225 | + | yfcI | b2305 | 0.62 | +0.5 |
2,421,225 | + | yfcI | b2305 | 0.62 | -0.5 |
2,421,226 | + | yfcI | b2305 | 0.62 | -0.2 |
2,421,227 | + | yfcI | b2305 | 0.62 | -0.1 |
2,421,227 | + | yfcI | b2305 | 0.62 | +1.9 |
2,421,237 | + | yfcI | b2305 | 0.64 | +0.1 |
2,421,335 | - | yfcI | b2305 | 0.75 | -0.0 |
2,421,345 | - | yfcI | b2305 | 0.76 | +0.3 |
2,421,370 | - | yfcI | b2305 | 0.78 | -0.3 |
2,421,370 | - | yfcI | b2305 | 0.78 | +0.9 |
2,421,385 | - | yfcI | b2305 | 0.80 | -1.5 |
2,421,425 | - | yfcI | b2305 | 0.85 | +0.1 |
2,421,425 | - | yfcI | b2305 | 0.85 | -0.8 |
2,421,425 | - | yfcI | b2305 | 0.85 | -1.0 |
2,421,431 | - | yfcI | b2305 | 0.85 | +1.9 |
2,421,437 | + | yfcI | b2305 | 0.86 | +0.0 |
2,421,439 | + | yfcI | b2305 | 0.86 | -2.0 |
2,421,445 | + | yfcI | b2305 | 0.87 | +0.3 |
2,421,457 | - | yfcI | b2305 | 0.88 | -1.1 |
2,421,457 | - | yfcI | b2305 | 0.88 | -1.6 |
2,421,494 | + | +0.1 | |||
2,421,494 | + | -0.7 | |||
2,421,502 | - | +0.3 | |||
2,421,503 | - | -0.8 | |||
2,421,504 | - | -0.7 | |||
2,421,535 | - | +0.5 | |||
2,421,535 | - | -0.1 | |||
2,421,694 | + | +0.7 | |||
2,421,771 | + | -0.6 | |||
2,421,782 | - | +0.1 | |||
2,421,790 | - | -0.6 | |||
2,421,793 | - | +2.0 | |||
2,421,793 | - | +0.8 | |||
2,421,793 | - | -1.0 | |||
2,421,793 | - | +0.0 | |||
2,421,806 | - | -0.3 | |||
2,421,860 | - | hisP | b2306 | 0.13 | -2.5 |
2,421,874 | - | hisP | b2306 | 0.15 | -0.7 |
2,421,918 | - | hisP | b2306 | 0.21 | +0.0 |
2,421,921 | + | hisP | b2306 | 0.21 | -4.2 |
2,421,928 | - | hisP | b2306 | 0.22 | -0.5 |
2,421,928 | - | hisP | b2306 | 0.22 | -1.2 |
2,421,963 | + | hisP | b2306 | 0.26 | -0.5 |
2,421,963 | + | hisP | b2306 | 0.26 | -0.1 |
2,421,971 | - | hisP | b2306 | 0.28 | -1.3 |
2,421,973 | + | hisP | b2306 | 0.28 | -0.8 |
2,421,981 | - | hisP | b2306 | 0.29 | +0.6 |
2,421,981 | - | hisP | b2306 | 0.29 | -1.6 |
2,422,005 | - | hisP | b2306 | 0.32 | +1.1 |
2,422,199 | + | hisP | b2306 | 0.57 | +0.7 |
2,422,199 | + | hisP | b2306 | 0.57 | -1.3 |
2,422,218 | - | hisP | b2306 | 0.59 | -0.8 |
2,422,232 | + | hisP | b2306 | 0.61 | -0.7 |
2,422,232 | + | hisP | b2306 | 0.61 | -1.8 |
2,422,255 | - | hisP | b2306 | 0.64 | -0.5 |
2,422,255 | - | hisP | b2306 | 0.64 | -1.1 |
2,422,375 | + | hisP | b2306 | 0.80 | -3.0 |
2,422,486 | - | -3.0 | |||
2,422,538 | - | +0.4 | |||
2,422,538 | - | -1.7 | |||
2,422,607 | + | -1.0 | |||
2,422,607 | + | -1.7 | |||
2,422,607 | + | +2.3 | |||
2,422,621 | + | hisM | b2307 | 0.11 | -1.7 |
2,422,627 | - | hisM | b2307 | 0.12 | -0.5 |
2,422,684 | - | hisM | b2307 | 0.20 | -0.2 |
2,422,684 | - | hisM | b2307 | 0.20 | -1.3 |
2,422,684 | - | hisM | b2307 | 0.20 | -0.9 |
2,422,711 | - | hisM | b2307 | 0.24 | -2.7 |
2,422,712 | - | hisM | b2307 | 0.24 | -2.2 |
2,422,730 | + | hisM | b2307 | 0.27 | -2.0 |
2,422,738 | - | hisM | b2307 | 0.28 | -1.8 |
2,422,740 | + | hisM | b2307 | 0.28 | -0.2 |
2,422,740 | + | hisM | b2307 | 0.28 | -2.3 |
2,422,765 | + | hisM | b2307 | 0.32 | -0.5 |
2,422,765 | - | hisM | b2307 | 0.32 | -2.2 |
2,422,788 | - | hisM | b2307 | 0.35 | -1.6 |
2,422,798 | - | hisM | b2307 | 0.36 | -1.2 |
2,422,836 | + | hisM | b2307 | 0.41 | +0.2 |
2,422,850 | - | hisM | b2307 | 0.43 | -1.5 |
2,422,850 | - | hisM | b2307 | 0.43 | -2.0 |
2,422,904 | - | hisM | b2307 | 0.51 | -1.1 |
2,422,942 | + | hisM | b2307 | 0.56 | -1.9 |
2,422,947 | - | hisM | b2307 | 0.57 | -0.9 |
2,422,962 | - | hisM | b2307 | 0.59 | -1.6 |
2,423,022 | + | hisM | b2307 | 0.67 | -0.8 |
2,423,038 | + | hisM | b2307 | 0.70 | +0.1 |
2,423,041 | - | hisM | b2307 | 0.70 | -0.6 |
2,423,145 | + | hisM | b2307 | 0.85 | +0.2 |
2,423,145 | + | hisM | b2307 | 0.85 | -2.2 |
2,423,199 | - | -0.5 | |||
2,423,199 | - | +0.5 | |||
2,423,233 | - | -1.2 | |||
2,423,240 | - | -0.5 | |||
2,423,240 | - | -0.5 | |||
2,423,265 | - | -0.4 | |||
2,423,265 | - | -0.9 | |||
2,423,267 | + | -1.1 | |||
2,423,280 | + | -0.7 | |||
2,423,280 | + | -2.6 | |||
2,423,310 | - | -0.6 | |||
2,423,310 | - | -1.6 | |||
2,423,346 | + | hisQ | b2308 | 0.14 | -0.9 |
2,423,421 | - | hisQ | b2308 | 0.25 | -0.5 |
2,423,426 | + | hisQ | b2308 | 0.25 | -1.5 |
2,423,490 | + | hisQ | b2308 | 0.35 | -1.6 |
Or see this region's nucleotide sequence