Strain Fitness in Escherichia coli BW25113 around b2306

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcI and hisP are separated by 196 nucleotideshisP and hisM are separated by 7 nucleotideshisM and hisQ overlap by 4 nucleotides b2305: yfcI - hypothetical protein (NCBI), at 2,420,671 to 2,421,561 yfcI b2306: hisP - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,421,758 to 2,422,531 hisP b2307: hisM - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,422,539 to 2,423,255 hisM b2308: hisQ - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,423,252 to 2,423,938 hisQ Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2420.758 kb on - strandat 2420.758 kb on - strandat 2420.772 kb on + strand, within yfcIat 2420.775 kb on - strand, within yfcIat 2420.775 kb on - strand, within yfcIat 2420.784 kb on - strand, within yfcIat 2420.801 kb on - strand, within yfcIat 2420.932 kb on + strand, within yfcIat 2420.932 kb on + strand, within yfcIat 2420.953 kb on - strand, within yfcIat 2420.966 kb on - strand, within yfcIat 2420.987 kb on + strand, within yfcIat 2420.990 kb on + strand, within yfcIat 2420.990 kb on + strandat 2420.990 kb on + strand, within yfcIat 2420.998 kb on - strand, within yfcIat 2421.000 kb on - strand, within yfcIat 2421.008 kb on - strand, within yfcIat 2421.052 kb on + strand, within yfcIat 2421.052 kb on - strand, within yfcIat 2421.054 kb on + strand, within yfcIat 2421.054 kb on + strand, within yfcIat 2421.055 kb on - strand, within yfcIat 2421.057 kb on + strand, within yfcIat 2421.060 kb on - strand, within yfcIat 2421.060 kb on - strand, within yfcIat 2421.063 kb on - strand, within yfcIat 2421.063 kb on - strand, within yfcIat 2421.075 kb on + strand, within yfcIat 2421.075 kb on + strand, within yfcIat 2421.089 kb on - strand, within yfcIat 2421.089 kb on - strand, within yfcIat 2421.129 kb on + strand, within yfcIat 2421.134 kb on - strand, within yfcIat 2421.146 kb on - strand, within yfcIat 2421.178 kb on - strand, within yfcIat 2421.179 kb on + strand, within yfcIat 2421.179 kb on + strand, within yfcIat 2421.210 kb on + strand, within yfcIat 2421.225 kb on + strand, within yfcIat 2421.225 kb on + strand, within yfcIat 2421.226 kb on + strand, within yfcIat 2421.227 kb on + strand, within yfcIat 2421.227 kb on + strand, within yfcIat 2421.237 kb on + strand, within yfcIat 2421.335 kb on - strand, within yfcIat 2421.345 kb on - strand, within yfcIat 2421.370 kb on - strand, within yfcIat 2421.370 kb on - strand, within yfcIat 2421.385 kb on - strand, within yfcIat 2421.425 kb on - strand, within yfcIat 2421.425 kb on - strand, within yfcIat 2421.425 kb on - strand, within yfcIat 2421.431 kb on - strand, within yfcIat 2421.437 kb on + strand, within yfcIat 2421.439 kb on + strand, within yfcIat 2421.445 kb on + strand, within yfcIat 2421.457 kb on - strand, within yfcIat 2421.457 kb on - strand, within yfcIat 2421.494 kb on + strandat 2421.494 kb on + strandat 2421.502 kb on - strandat 2421.503 kb on - strandat 2421.504 kb on - strandat 2421.535 kb on - strandat 2421.535 kb on - strandat 2421.694 kb on + strandat 2421.771 kb on + strandat 2421.782 kb on - strandat 2421.790 kb on - strandat 2421.793 kb on - strandat 2421.793 kb on - strandat 2421.793 kb on - strandat 2421.793 kb on - strandat 2421.806 kb on - strandat 2421.860 kb on - strand, within hisPat 2421.874 kb on - strand, within hisPat 2421.918 kb on - strand, within hisPat 2421.921 kb on + strand, within hisPat 2421.928 kb on - strand, within hisPat 2421.928 kb on - strand, within hisPat 2421.963 kb on + strand, within hisPat 2421.963 kb on + strand, within hisPat 2421.971 kb on - strand, within hisPat 2421.973 kb on + strand, within hisPat 2421.981 kb on - strand, within hisPat 2421.981 kb on - strand, within hisPat 2422.005 kb on - strand, within hisPat 2422.199 kb on + strand, within hisPat 2422.199 kb on + strand, within hisPat 2422.218 kb on - strand, within hisPat 2422.232 kb on + strand, within hisPat 2422.232 kb on + strand, within hisPat 2422.255 kb on - strand, within hisPat 2422.255 kb on - strand, within hisPat 2422.375 kb on + strand, within hisPat 2422.486 kb on - strandat 2422.538 kb on - strandat 2422.538 kb on - strandat 2422.607 kb on + strandat 2422.607 kb on + strandat 2422.607 kb on + strandat 2422.621 kb on + strand, within hisMat 2422.627 kb on - strand, within hisMat 2422.684 kb on - strand, within hisMat 2422.684 kb on - strand, within hisMat 2422.684 kb on - strand, within hisMat 2422.711 kb on - strand, within hisMat 2422.712 kb on - strand, within hisMat 2422.730 kb on + strand, within hisMat 2422.738 kb on - strand, within hisMat 2422.740 kb on + strand, within hisMat 2422.740 kb on + strand, within hisMat 2422.765 kb on + strand, within hisMat 2422.765 kb on - strand, within hisMat 2422.788 kb on - strand, within hisMat 2422.798 kb on - strand, within hisMat 2422.836 kb on + strand, within hisMat 2422.850 kb on - strand, within hisMat 2422.850 kb on - strand, within hisMat 2422.904 kb on - strand, within hisMat 2422.942 kb on + strand, within hisMat 2422.947 kb on - strand, within hisMat 2422.962 kb on - strand, within hisMat 2423.022 kb on + strand, within hisMat 2423.038 kb on + strand, within hisMat 2423.041 kb on - strand, within hisMat 2423.145 kb on + strand, within hisMat 2423.145 kb on + strand, within hisMat 2423.199 kb on - strandat 2423.199 kb on - strandat 2423.233 kb on - strandat 2423.240 kb on - strandat 2423.240 kb on - strandat 2423.265 kb on - strandat 2423.265 kb on - strandat 2423.267 kb on + strandat 2423.280 kb on + strandat 2423.280 kb on + strandat 2423.310 kb on - strandat 2423.310 kb on - strandat 2423.346 kb on + strand, within hisQat 2423.421 kb on - strand, within hisQat 2423.426 kb on + strand, within hisQat 2423.490 kb on + strand, within hisQ

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,420,758 - +0.1
2,420,758 - +1.3
2,420,772 + yfcI b2305 0.11 +0.5
2,420,775 - yfcI b2305 0.12 +0.3
2,420,775 - yfcI b2305 0.12 -1.2
2,420,784 - yfcI b2305 0.13 +0.5
2,420,801 - yfcI b2305 0.15 +0.4
2,420,932 + yfcI b2305 0.29 +0.2
2,420,932 + yfcI b2305 0.29 -0.9
2,420,953 - yfcI b2305 0.32 +0.3
2,420,966 - yfcI b2305 0.33 -1.3
2,420,987 + yfcI b2305 0.35 +0.3
2,420,990 + yfcI b2305 0.36 +0.6
2,420,990 + +0.8
2,420,990 + yfcI b2305 0.36 +0.9
2,420,998 - yfcI b2305 0.37 -0.1
2,421,000 - yfcI b2305 0.37 +0.2
2,421,008 - yfcI b2305 0.38 -0.6
2,421,052 + yfcI b2305 0.43 -0.2
2,421,052 - yfcI b2305 0.43 +0.1
2,421,054 + yfcI b2305 0.43 +0.8
2,421,054 + yfcI b2305 0.43 -0.9
2,421,055 - yfcI b2305 0.43 -0.2
2,421,057 + yfcI b2305 0.43 +0.8
2,421,060 - yfcI b2305 0.44 +0.6
2,421,060 - yfcI b2305 0.44 +0.1
2,421,063 - yfcI b2305 0.44 +0.3
2,421,063 - yfcI b2305 0.44 -0.6
2,421,075 + yfcI b2305 0.45 -2.1
2,421,075 + yfcI b2305 0.45 -0.7
2,421,089 - yfcI b2305 0.47 +0.1
2,421,089 - yfcI b2305 0.47 -1.2
2,421,129 + yfcI b2305 0.51 +0.3
2,421,134 - yfcI b2305 0.52 +0.6
2,421,146 - yfcI b2305 0.53 +0.3
2,421,178 - yfcI b2305 0.57 -2.5
2,421,179 + yfcI b2305 0.57 -0.1
2,421,179 + yfcI b2305 0.57 -0.5
2,421,210 + yfcI b2305 0.60 -0.5
2,421,225 + yfcI b2305 0.62 +0.5
2,421,225 + yfcI b2305 0.62 -0.5
2,421,226 + yfcI b2305 0.62 -0.2
2,421,227 + yfcI b2305 0.62 -0.1
2,421,227 + yfcI b2305 0.62 +1.9
2,421,237 + yfcI b2305 0.64 +0.1
2,421,335 - yfcI b2305 0.75 -0.0
2,421,345 - yfcI b2305 0.76 +0.3
2,421,370 - yfcI b2305 0.78 -0.3
2,421,370 - yfcI b2305 0.78 +0.9
2,421,385 - yfcI b2305 0.80 -1.5
2,421,425 - yfcI b2305 0.85 +0.1
2,421,425 - yfcI b2305 0.85 -0.8
2,421,425 - yfcI b2305 0.85 -1.0
2,421,431 - yfcI b2305 0.85 +1.9
2,421,437 + yfcI b2305 0.86 +0.0
2,421,439 + yfcI b2305 0.86 -2.0
2,421,445 + yfcI b2305 0.87 +0.3
2,421,457 - yfcI b2305 0.88 -1.1
2,421,457 - yfcI b2305 0.88 -1.6
2,421,494 + +0.1
2,421,494 + -0.7
2,421,502 - +0.3
2,421,503 - -0.8
2,421,504 - -0.7
2,421,535 - +0.5
2,421,535 - -0.1
2,421,694 + +0.7
2,421,771 + -0.6
2,421,782 - +0.1
2,421,790 - -0.6
2,421,793 - +2.0
2,421,793 - +0.8
2,421,793 - -1.0
2,421,793 - +0.0
2,421,806 - -0.3
2,421,860 - hisP b2306 0.13 -2.5
2,421,874 - hisP b2306 0.15 -0.7
2,421,918 - hisP b2306 0.21 +0.0
2,421,921 + hisP b2306 0.21 -4.2
2,421,928 - hisP b2306 0.22 -0.5
2,421,928 - hisP b2306 0.22 -1.2
2,421,963 + hisP b2306 0.26 -0.5
2,421,963 + hisP b2306 0.26 -0.1
2,421,971 - hisP b2306 0.28 -1.3
2,421,973 + hisP b2306 0.28 -0.8
2,421,981 - hisP b2306 0.29 +0.6
2,421,981 - hisP b2306 0.29 -1.6
2,422,005 - hisP b2306 0.32 +1.1
2,422,199 + hisP b2306 0.57 +0.7
2,422,199 + hisP b2306 0.57 -1.3
2,422,218 - hisP b2306 0.59 -0.8
2,422,232 + hisP b2306 0.61 -0.7
2,422,232 + hisP b2306 0.61 -1.8
2,422,255 - hisP b2306 0.64 -0.5
2,422,255 - hisP b2306 0.64 -1.1
2,422,375 + hisP b2306 0.80 -3.0
2,422,486 - -3.0
2,422,538 - +0.4
2,422,538 - -1.7
2,422,607 + -1.0
2,422,607 + -1.7
2,422,607 + +2.3
2,422,621 + hisM b2307 0.11 -1.7
2,422,627 - hisM b2307 0.12 -0.5
2,422,684 - hisM b2307 0.20 -0.2
2,422,684 - hisM b2307 0.20 -1.3
2,422,684 - hisM b2307 0.20 -0.9
2,422,711 - hisM b2307 0.24 -2.7
2,422,712 - hisM b2307 0.24 -2.2
2,422,730 + hisM b2307 0.27 -2.0
2,422,738 - hisM b2307 0.28 -1.8
2,422,740 + hisM b2307 0.28 -0.2
2,422,740 + hisM b2307 0.28 -2.3
2,422,765 + hisM b2307 0.32 -0.5
2,422,765 - hisM b2307 0.32 -2.2
2,422,788 - hisM b2307 0.35 -1.6
2,422,798 - hisM b2307 0.36 -1.2
2,422,836 + hisM b2307 0.41 +0.2
2,422,850 - hisM b2307 0.43 -1.5
2,422,850 - hisM b2307 0.43 -2.0
2,422,904 - hisM b2307 0.51 -1.1
2,422,942 + hisM b2307 0.56 -1.9
2,422,947 - hisM b2307 0.57 -0.9
2,422,962 - hisM b2307 0.59 -1.6
2,423,022 + hisM b2307 0.67 -0.8
2,423,038 + hisM b2307 0.70 +0.1
2,423,041 - hisM b2307 0.70 -0.6
2,423,145 + hisM b2307 0.85 +0.2
2,423,145 + hisM b2307 0.85 -2.2
2,423,199 - -0.5
2,423,199 - +0.5
2,423,233 - -1.2
2,423,240 - -0.5
2,423,240 - -0.5
2,423,265 - -0.4
2,423,265 - -0.9
2,423,267 + -1.1
2,423,280 + -0.7
2,423,280 + -2.6
2,423,310 - -0.6
2,423,310 - -1.6
2,423,346 + hisQ b2308 0.14 -0.9
2,423,421 - hisQ b2308 0.25 -0.5
2,423,426 + hisQ b2308 0.25 -1.5
2,423,490 + hisQ b2308 0.35 -1.6

Or see this region's nucleotide sequence