Strain Fitness in Escherichia coli BW25113 around b1784

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyeaG and yeaH are separated by 112 nucleotidesyeaH and yeaI are separated by 146 nucleotides b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,864,932 to 1,866,866 yeaG b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,866,979 to 1,868,262 yeaH b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884 yeaI Position (kb) 1866 1867 1868 1869Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1866.001 kb on + strand, within yeaGat 1866.009 kb on - strand, within yeaGat 1866.158 kb on + strand, within yeaGat 1866.158 kb on + strand, within yeaGat 1866.313 kb on - strand, within yeaGat 1866.545 kb on - strand, within yeaGat 1866.658 kb on + strand, within yeaGat 1866.698 kb on + strandat 1866.698 kb on + strandat 1866.706 kb on - strandat 1866.877 kb on - strandat 1866.880 kb on + strandat 1866.928 kb on - strandat 1866.928 kb on - strandat 1867.119 kb on - strand, within yeaHat 1867.362 kb on - strand, within yeaHat 1867.362 kb on - strand, within yeaHat 1867.578 kb on + strand, within yeaHat 1867.578 kb on + strand, within yeaHat 1867.694 kb on + strand, within yeaHat 1867.723 kb on + strand, within yeaHat 1867.772 kb on - strand, within yeaHat 1867.803 kb on + strand, within yeaHat 1867.803 kb on + strand, within yeaHat 1867.843 kb on + strand, within yeaHat 1867.941 kb on + strand, within yeaHat 1867.984 kb on - strand, within yeaHat 1868.025 kb on - strand, within yeaHat 1868.179 kb on + strandat 1868.219 kb on + strandat 1868.224 kb on + strandat 1868.238 kb on + strandat 1868.238 kb on + strandat 1868.275 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,866,001 + yeaG b1783 0.55 +3.6
1,866,009 - yeaG b1783 0.56 +4.5
1,866,158 + yeaG b1783 0.63 +3.9
1,866,158 + yeaG b1783 0.63 +3.5
1,866,313 - yeaG b1783 0.71 +4.4
1,866,545 - yeaG b1783 0.83 +4.6
1,866,658 + yeaG b1783 0.89 +3.1
1,866,698 + +5.2
1,866,698 + +4.3
1,866,706 - +3.7
1,866,877 - +3.8
1,866,880 + +0.7
1,866,928 - +4.3
1,866,928 - +4.2
1,867,119 - yeaH b1784 0.11 +4.6
1,867,362 - yeaH b1784 0.30 +3.7
1,867,362 - yeaH b1784 0.30 +3.3
1,867,578 + yeaH b1784 0.47 +4.1
1,867,578 + yeaH b1784 0.47 +3.5
1,867,694 + yeaH b1784 0.56 +4.5
1,867,723 + yeaH b1784 0.58 +5.3
1,867,772 - yeaH b1784 0.62 +4.4
1,867,803 + yeaH b1784 0.64 +3.9
1,867,803 + yeaH b1784 0.64 +3.4
1,867,843 + yeaH b1784 0.67 +4.3
1,867,941 + yeaH b1784 0.75 +4.7
1,867,984 - yeaH b1784 0.78 +3.3
1,868,025 - yeaH b1784 0.81 +4.5
1,868,179 + +3.8
1,868,219 + +3.2
1,868,224 + +3.1
1,868,238 + -0.2
1,868,238 + +0.5
1,868,275 + +0.7

Or see this region's nucleotide sequence