Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01000 and UW163_RS24290 are separated by 349 nucleotides UW163_RS24290 and UW163_RS24295 are separated by 136 nucleotides UW163_RS24295 and UW163_RS01005 are separated by 114 nucleotides UW163_RS01005 and UW163_RS01010 are separated by 12 nucleotides
UW163_RS01000: UW163_RS01000 - glutamate-1-semialdehyde-2,1-aminomutase, at 198,972 to 200,273
_RS01000
UW163_RS24290: UW163_RS24290 - 4-hydroxy-tetrahydrodipicolinate synthase, at 200,623 to 201,124
_RS24290
UW163_RS24295: UW163_RS24295 - hypothetical protein, at 201,261 to 201,452
_RS24295
UW163_RS01005: UW163_RS01005 - LemA family protein, at 201,567 to 202,193
_RS01005
UW163_RS01010: UW163_RS01010 - membrane protein, at 202,206 to 203,057
_RS01010
Position (kb) 201
202 Strain fitness (log2 ratio) -1
0
1 at 200.573 kb on + strand at 200.573 kb on + strand at 200.573 kb on + strand at 200.574 kb on - strand at 200.574 kb on - strand at 200.574 kb on - strand at 200.736 kb on + strand, within UW163_RS24290 at 200.782 kb on - strand, within UW163_RS24290 at 200.782 kb on - strand, within UW163_RS24290 at 200.814 kb on + strand, within UW163_RS24290 at 200.815 kb on - strand, within UW163_RS24290 at 200.815 kb on - strand, within UW163_RS24290 at 200.815 kb on - strand at 201.039 kb on + strand, within UW163_RS24290 at 201.039 kb on + strand, within UW163_RS24290 at 201.057 kb on + strand, within UW163_RS24290 at 201.133 kb on - strand at 201.450 kb on + strand at 201.451 kb on - strand at 201.480 kb on + strand at 201.493 kb on + strand at 201.670 kb on - strand, within UW163_RS01005 at 201.783 kb on + strand, within UW163_RS01005 at 201.784 kb on - strand, within UW163_RS01005 at 201.957 kb on + strand, within UW163_RS01005 at 202.034 kb on - strand, within UW163_RS01005 at 202.047 kb on + strand, within UW163_RS01005 at 202.048 kb on - strand, within UW163_RS01005 at 202.048 kb on - strand, within UW163_RS01005 at 202.049 kb on + strand, within UW163_RS01005 at 202.049 kb on + strand, within UW163_RS01005 at 202.068 kb on + strand, within UW163_RS01005 at 202.068 kb on + strand, within UW163_RS01005 at 202.068 kb on + strand, within UW163_RS01005 at 202.069 kb on - strand, within UW163_RS01005 at 202.123 kb on - strand, within UW163_RS01005 at 202.282 kb on - strand at 202.392 kb on + strand, within UW163_RS01010
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 200,573 + +0.9 200,573 + -1.2 200,573 + -0.5 200,574 - -0.3 200,574 - -1.1 200,574 - -0.3 200,736 + UW163_RS24290 0.23 -1.6 200,782 - UW163_RS24290 0.32 +1.1 200,782 - UW163_RS24290 0.32 +0.2 200,814 + UW163_RS24290 0.38 -0.9 200,815 - UW163_RS24290 0.38 +0.2 200,815 - UW163_RS24290 0.38 -0.0 200,815 - +0.7 201,039 + UW163_RS24290 0.83 -0.4 201,039 + UW163_RS24290 0.83 +0.2 201,057 + UW163_RS24290 0.86 +0.4 201,133 - +0.1 201,450 + +0.1 201,451 - +1.7 201,480 + -0.4 201,493 + -0.1 201,670 - UW163_RS01005 0.16 +0.1 201,783 + UW163_RS01005 0.34 -0.2 201,784 - UW163_RS01005 0.35 +0.1 201,957 + UW163_RS01005 0.62 +0.6 202,034 - UW163_RS01005 0.74 +1.1 202,047 + UW163_RS01005 0.77 +0.3 202,048 - UW163_RS01005 0.77 +0.6 202,048 - UW163_RS01005 0.77 -0.3 202,049 + UW163_RS01005 0.77 -0.0 202,049 + UW163_RS01005 0.77 +0.2 202,068 + UW163_RS01005 0.80 -0.2 202,068 + UW163_RS01005 0.80 -0.3 202,068 + UW163_RS01005 0.80 +0.1 202,069 - UW163_RS01005 0.80 -0.8 202,123 - UW163_RS01005 0.89 +1.1 202,282 - +0.5 202,392 + UW163_RS01010 0.22 -0.0
Or see this region's nucleotide sequence