Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS22820

Experiment: CPG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CPG
1,724,541	+				-0.4
1,724,542	-				-0.8
1,724,621	+				+0.3
1,724,622	-				-0.0
1,724,644	+				-1.4
1,724,645	-				+0.0
1,724,645	-				-1.8
1,724,645	-				+0.3
1,724,645	-				-0.7
1,724,737	+		UW163_RS22815	0.17	-0.1
1,725,001	+		UW163_RS22815	0.63	+0.3
1,725,002	-		UW163_RS22815	0.64	+0.0
1,725,002	-		UW163_RS22815	0.64	+0.6
1,725,002	-		UW163_RS22815	0.64	+0.2
1,725,034	+		UW163_RS22815	0.69	+0.3
1,725,035	-		UW163_RS22815	0.70	-0.4
1,725,035	-		UW163_RS22815	0.70	+1.1
1,725,038	+		UW163_RS22815	0.70	+0.2
1,725,039	-		UW163_RS22815	0.70	+0.6
1,725,321	+				-0.3
1,725,322	-				+0.2
1,725,322	-				-0.5
1,725,322	-				+1.3
1,725,335	-				-0.2
1,725,411	-				-0.3
1,725,510	-				-0.0
1,725,567	-				-0.3
1,725,668	+				-1.3
1,725,833	+		UW163_RS22820	0.14	-0.4
1,725,834	-		UW163_RS22820	0.14	-0.1
1,726,032	-		UW163_RS22820	0.23	+0.6
1,726,091	+		UW163_RS22820	0.25	-0.4
1,726,092	-		UW163_RS22820	0.25	-0.2
1,726,092	-				+2.1
1,726,158	+		UW163_RS22820	0.28	-0.2
1,726,158	+		UW163_RS22820	0.28	+0.0
1,726,158	+		UW163_RS22820	0.28	-0.7
1,726,158	+				+0.2
1,726,175	+		UW163_RS22820	0.29	-0.7
1,726,175	+		UW163_RS22820	0.29	-0.0
1,726,176	-		UW163_RS22820	0.29	+0.0
1,726,197	-		UW163_RS22820	0.30	-0.8
1,726,364	+		UW163_RS22820	0.37	-1.8
1,726,364	+		UW163_RS22820	0.37	-0.5
1,726,364	+		UW163_RS22820	0.37	-0.2
1,726,364	+		UW163_RS22820	0.37	+1.1
1,726,364	+		UW163_RS22820	0.37	-0.5
1,726,364	+		UW163_RS22820	0.37	-1.6
1,726,364	+		UW163_RS22820	0.37	-0.3
1,726,365	-		UW163_RS22820	0.37	-0.9
1,726,365	-		UW163_RS22820	0.37	+1.3
1,726,414	+		UW163_RS22820	0.39	+0.5
1,726,415	-		UW163_RS22820	0.39	-0.1
1,726,541	+		UW163_RS22820	0.45	-0.1
1,726,541	+		UW163_RS22820	0.45	+0.5
1,726,542	-		UW163_RS22820	0.45	-0.2
1,726,548	-		UW163_RS22820	0.45	-0.0
1,726,548	-		UW163_RS22820	0.45	-0.3
1,726,585	+		UW163_RS22820	0.46	-0.7
1,726,586	-		UW163_RS22820	0.47	-1.0
1,726,595	+		UW163_RS22820	0.47	+0.2
1,726,596	-		UW163_RS22820	0.47	-1.0
1,726,623	+		UW163_RS22820	0.48	-0.1
1,726,623	+		UW163_RS22820	0.48	+0.4
1,726,748	+		UW163_RS22820	0.53	-0.9
1,726,749	-		UW163_RS22820	0.54	+0.1
1,726,850	+		UW163_RS22820	0.58	-0.1
1,726,851	-		UW163_RS22820	0.58	-0.5
1,726,922	+		UW163_RS22820	0.61	-0.7
1,726,967	+		UW163_RS22820	0.63	-1.7
1,726,967	+		UW163_RS22820	0.63	-0.4
1,726,968	-		UW163_RS22820	0.63	-0.0
1,726,968	-		UW163_RS22820	0.63	-0.4
1,726,968	-		UW163_RS22820	0.63	+0.3
1,726,968	-		UW163_RS22820	0.63	+0.4
1,727,027	+		UW163_RS22820	0.65	-1.7
1,727,027	+		UW163_RS22820	0.65	+0.0
1,727,027	+		UW163_RS22820	0.65	+0.3
1,727,027	+		UW163_RS22820	0.65	+0.4
1,727,027	+		UW163_RS22820	0.65	-0.8
1,727,027	+		UW163_RS22820	0.65	-0.4
1,727,027	+		UW163_RS22820	0.65	-0.6
1,727,027	+		UW163_RS22820	0.65	+0.5
1,727,027	+		UW163_RS22820	0.65	+0.7
1,727,027	-		UW163_RS22820	0.65	+0.1
1,727,028	-		UW163_RS22820	0.65	-1.3
1,727,028	-		UW163_RS22820	0.65	-0.2
1,727,028	-		UW163_RS22820	0.65	-0.1
1,727,054	+		UW163_RS22820	0.67	-0.8
1,727,054	+		UW163_RS22820	0.67	-1.0
1,727,055	-		UW163_RS22820	0.67	+0.2
1,727,064	-		UW163_RS22820	0.67	-0.1
1,727,138	+		UW163_RS22820	0.70	+0.0
1,727,138	+		UW163_RS22820	0.70	+0.1
1,727,139	-		UW163_RS22820	0.70	+0.3
1,727,139	-		UW163_RS22820	0.70	-0.1
1,727,142	-		UW163_RS22820	0.70	+0.4
1,727,240	+		UW163_RS22820	0.75	-0.6
1,727,240	+		UW163_RS22820	0.75	-0.3
1,727,241	-		UW163_RS22820	0.75	+0.5
1,727,241	-		UW163_RS22820	0.75	-0.2
1,727,241	-		UW163_RS22820	0.75	-0.1
1,727,241	-		UW163_RS22820	0.75	-0.2
1,727,241	-		UW163_RS22820	0.75	+0.2
1,727,241	-		UW163_RS22820	0.75	-0.2
1,727,333	+		UW163_RS22820	0.79	-0.0
1,727,333	+		UW163_RS22820	0.79	+0.2
1,727,333	+		UW163_RS22820	0.79	-1.0
1,727,334	-		UW163_RS22820	0.79	-0.6
1,727,334	-		UW163_RS22820	0.79	-0.0
1,727,334	-		UW163_RS22820	0.79	-0.4
1,727,334	-		UW163_RS22820	0.79	+0.2
1,727,334	-		UW163_RS22820	0.79	+0.4
1,727,339	+		UW163_RS22820	0.79	-1.5
1,727,339	+		UW163_RS22820	0.79	-0.1
1,727,339	+		UW163_RS22820	0.79	+0.0
1,727,339	+		UW163_RS22820	0.79	-0.0
1,727,339	+		UW163_RS22820	0.79	+0.2
1,727,339	+		UW163_RS22820	0.79	+0.1
1,727,340	-		UW163_RS22820	0.79	-0.2
1,727,340	-		UW163_RS22820	0.79	+0.1
1,727,519	+		UW163_RS22820	0.87	+0.3
1,727,690	+				+0.4
1,727,690	+				+0.2
1,727,831	+				-0.3
1,727,832	-				+0.2
1,727,994	+		UW163_RS22825	0.12	+0.1
1,727,994	+		UW163_RS22825	0.12	+0.1
1,727,994	+		UW163_RS22825	0.12	+0.1
1,728,233	+		UW163_RS22825	0.33	-0.2
1,728,254	+		UW163_RS22825	0.34	+0.1
1,728,254	+		UW163_RS22825	0.34	+0.5
1,728,254	+		UW163_RS22825	0.34	-0.5
1,728,254	+		UW163_RS22825	0.34	+0.1
1,728,254	+		UW163_RS22825	0.34	+0.3
1,728,254	+		UW163_RS22825	0.34	+0.3
1,728,255	-		UW163_RS22825	0.35	-0.3
1,728,255	-		UW163_RS22825	0.35	+0.9
1,728,255	-		UW163_RS22825	0.35	-0.3
1,728,255	-		UW163_RS22825	0.35	+0.2
1,728,306	-		UW163_RS22825	0.39	+0.2
1,728,306	-		UW163_RS22825	0.39	-0.2
1,728,339	-		UW163_RS22825	0.42	+0.3
1,728,339	-		UW163_RS22825	0.42	-0.1
1,728,447	+		UW163_RS22825	0.51	+0.7
1,728,448	-		UW163_RS22825	0.51	-0.6