Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS19945

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS19940 and UW163_RS19945 are separated by 235 nucleotidesUW163_RS19945 and UW163_RS19950 are separated by 141 nucleotides UW163_RS19940: UW163_RS19940 - DNA helicase, at 949,452 to 954,953 _RS19940 UW163_RS19945: UW163_RS19945 - excinuclease ABC subunit A, at 955,189 to 961,026 _RS19945 UW163_RS19950: UW163_RS19950 - rhomboid family intramembrane serine protease, at 961,168 to 961,761 _RS19950 Position (kb) 955 956 957 958 959 960 961 962Strain fitness (log2 ratio) -2 -1 0 1 2at 954.351 kb on + strand, within UW163_RS19940at 954.426 kb on + strandat 954.426 kb on + strandat 954.426 kb on + strandat 954.427 kb on - strandat 954.427 kb on - strandat 954.486 kb on + strandat 954.486 kb on + strandat 954.486 kb on + strandat 954.486 kb on + strandat 954.486 kb on + strandat 954.490 kb on + strandat 954.491 kb on - strandat 954.491 kb on - strandat 954.799 kb on + strandat 954.799 kb on + strandat 954.800 kb on - strandat 954.811 kb on - strandat 954.811 kb on - strandat 954.918 kb on + strandat 954.919 kb on - strandat 954.951 kb on + strandat 954.989 kb on - strandat 955.330 kb on + strandat 955.331 kb on - strandat 955.373 kb on - strandat 955.600 kb on + strandat 955.600 kb on + strandat 955.600 kb on + strandat 955.601 kb on - strandat 955.601 kb on - strandat 955.601 kb on - strandat 955.721 kb on - strandat 955.784 kb on + strand, within UW163_RS19945at 955.785 kb on - strand, within UW163_RS19945at 955.785 kb on - strand, within UW163_RS19945at 955.883 kb on - strand, within UW163_RS19945at 955.960 kb on + strand, within UW163_RS19945at 956.300 kb on - strand, within UW163_RS19945at 956.359 kb on + strand, within UW163_RS19945at 956.359 kb on + strand, within UW163_RS19945at 956.360 kb on - strand, within UW163_RS19945at 956.360 kb on - strand, within UW163_RS19945at 956.360 kb on - strand, within UW163_RS19945at 956.361 kb on + strand, within UW163_RS19945at 956.362 kb on - strand, within UW163_RS19945at 956.483 kb on + strand, within UW163_RS19945at 956.654 kb on - strand, within UW163_RS19945at 956.654 kb on - strand, within UW163_RS19945at 957.017 kb on - strand, within UW163_RS19945at 957.361 kb on + strand, within UW163_RS19945at 957.361 kb on + strand, within UW163_RS19945at 957.361 kb on + strand, within UW163_RS19945at 957.362 kb on - strand, within UW163_RS19945at 957.362 kb on - strand, within UW163_RS19945at 957.362 kb on - strand, within UW163_RS19945at 957.427 kb on + strand, within UW163_RS19945at 957.529 kb on + strand, within UW163_RS19945at 957.529 kb on + strand, within UW163_RS19945at 957.530 kb on - strand, within UW163_RS19945at 957.530 kb on - strand, within UW163_RS19945at 957.530 kb on - strand, within UW163_RS19945at 957.530 kb on - strand, within UW163_RS19945at 957.721 kb on + strand, within UW163_RS19945at 957.722 kb on - strand, within UW163_RS19945at 958.130 kb on - strand, within UW163_RS19945at 958.130 kb on - strand, within UW163_RS19945at 958.462 kb on + strand, within UW163_RS19945at 958.567 kb on + strand, within UW163_RS19945at 958.567 kb on + strand, within UW163_RS19945at 958.568 kb on - strand, within UW163_RS19945at 958.568 kb on - strand, within UW163_RS19945at 959.458 kb on + strand, within UW163_RS19945at 959.459 kb on - strand, within UW163_RS19945at 959.459 kb on - strand, within UW163_RS19945at 959.557 kb on + strand, within UW163_RS19945at 959.557 kb on + strand, within UW163_RS19945at 959.558 kb on - strand, within UW163_RS19945at 959.558 kb on - strand, within UW163_RS19945at 960.198 kb on + strand, within UW163_RS19945at 960.250 kb on + strand, within UW163_RS19945at 960.250 kb on + strand, within UW163_RS19945at 960.250 kb on + strand, within UW163_RS19945at 960.250 kb on + strand, within UW163_RS19945at 960.250 kb on + strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.251 kb on - strand, within UW163_RS19945at 960.317 kb on - strand, within UW163_RS19945at 960.727 kb on + strandat 960.727 kb on + strandat 960.728 kb on - strandat 960.728 kb on - strandat 961.017 kb on + strandat 961.018 kb on - strandat 961.302 kb on - strand, within UW163_RS19950at 961.302 kb on - strand, within UW163_RS19950at 961.302 kb on - strand, within UW163_RS19950at 961.302 kb on - strand, within UW163_RS19950at 961.382 kb on + strand, within UW163_RS19950at 961.383 kb on - strand, within UW163_RS19950at 961.383 kb on - strand, within UW163_RS19950at 961.499 kb on + strand, within UW163_RS19950at 961.499 kb on + strand, within UW163_RS19950at 961.499 kb on + strand, within UW163_RS19950at 961.500 kb on - strand, within UW163_RS19950at 961.500 kb on - strandat 961.500 kb on - strand, within UW163_RS19950at 961.500 kb on - strand, within UW163_RS19950at 961.500 kb on - strand, within UW163_RS19950at 961.501 kb on - strand, within UW163_RS19950at 961.610 kb on + strand, within UW163_RS19950at 961.790 kb on + strandat 961.791 kb on - strandat 961.791 kb on - strandat 961.959 kb on + strandat 961.959 kb on + strandat 961.959 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
954,351 + UW163_RS19940 0.89 +0.4
954,426 + +1.1
954,426 + -0.4
954,426 + +0.1
954,427 - +0.4
954,427 - -0.6
954,486 + +0.1
954,486 + +0.4
954,486 + -0.5
954,486 + -1.4
954,486 + +0.9
954,490 + +0.1
954,491 - +0.7
954,491 - -0.9
954,799 + -1.1
954,799 + +0.9
954,800 - +0.4
954,811 - +0.3
954,811 - +0.5
954,918 + -1.6
954,919 - -1.0
954,951 + -0.4
954,989 - +0.1
955,330 + +1.0
955,331 - +0.6
955,373 - +0.1
955,600 + -0.5
955,600 + -0.2
955,600 + -0.2
955,601 - -1.8
955,601 - -0.3
955,601 - +0.1
955,721 - -0.3
955,784 + UW163_RS19945 0.10 -0.9
955,785 - UW163_RS19945 0.10 +0.7
955,785 - UW163_RS19945 0.10 +0.2
955,883 - UW163_RS19945 0.12 +0.1
955,960 + UW163_RS19945 0.13 -0.7
956,300 - UW163_RS19945 0.19 -0.6
956,359 + UW163_RS19945 0.20 -0.0
956,359 + UW163_RS19945 0.20 -0.1
956,360 - UW163_RS19945 0.20 -0.4
956,360 - UW163_RS19945 0.20 +0.3
956,360 - UW163_RS19945 0.20 -0.2
956,361 + UW163_RS19945 0.20 -0.3
956,362 - UW163_RS19945 0.20 +0.2
956,483 + UW163_RS19945 0.22 -0.8
956,654 - UW163_RS19945 0.25 +1.7
956,654 - UW163_RS19945 0.25 -0.8
957,017 - UW163_RS19945 0.31 +0.4
957,361 + UW163_RS19945 0.37 +0.1
957,361 + UW163_RS19945 0.37 -0.2
957,361 + UW163_RS19945 0.37 -0.8
957,362 - UW163_RS19945 0.37 +0.5
957,362 - UW163_RS19945 0.37 -0.0
957,362 - UW163_RS19945 0.37 +0.2
957,427 + UW163_RS19945 0.38 +1.0
957,529 + UW163_RS19945 0.40 -0.7
957,529 + UW163_RS19945 0.40 -0.6
957,530 - UW163_RS19945 0.40 -0.0
957,530 - UW163_RS19945 0.40 -0.3
957,530 - UW163_RS19945 0.40 +0.6
957,530 - UW163_RS19945 0.40 -0.1
957,721 + UW163_RS19945 0.43 -0.4
957,722 - UW163_RS19945 0.43 +0.5
958,130 - UW163_RS19945 0.50 -0.4
958,130 - UW163_RS19945 0.50 +1.5
958,462 + UW163_RS19945 0.56 -0.8
958,567 + UW163_RS19945 0.58 -0.5
958,567 + UW163_RS19945 0.58 -0.1
958,568 - UW163_RS19945 0.58 -0.2
958,568 - UW163_RS19945 0.58 -2.6
959,458 + UW163_RS19945 0.73 -0.8
959,459 - UW163_RS19945 0.73 +0.4
959,459 - UW163_RS19945 0.73 +0.4
959,557 + UW163_RS19945 0.75 +0.3
959,557 + UW163_RS19945 0.75 +0.0
959,558 - UW163_RS19945 0.75 -0.0
959,558 - UW163_RS19945 0.75 -1.1
960,198 + UW163_RS19945 0.86 -0.5
960,250 + UW163_RS19945 0.87 +0.5
960,250 + UW163_RS19945 0.87 -0.3
960,250 + UW163_RS19945 0.87 +0.0
960,250 + UW163_RS19945 0.87 -0.7
960,250 + UW163_RS19945 0.87 -0.2
960,251 - UW163_RS19945 0.87 -0.3
960,251 - UW163_RS19945 0.87 +0.1
960,251 - UW163_RS19945 0.87 -0.7
960,251 - UW163_RS19945 0.87 -0.2
960,251 - UW163_RS19945 0.87 +1.2
960,251 - UW163_RS19945 0.87 +0.2
960,251 - UW163_RS19945 0.87 -0.3
960,317 - UW163_RS19945 0.88 +0.2
960,727 + +0.1
960,727 + +0.4
960,728 - +0.2
960,728 - +0.1
961,017 + -0.4
961,018 - +0.1
961,302 - UW163_RS19950 0.23 +0.0
961,302 - UW163_RS19950 0.23 -1.5
961,302 - UW163_RS19950 0.23 -0.6
961,302 - UW163_RS19950 0.23 +0.9
961,382 + UW163_RS19950 0.36 -0.5
961,383 - UW163_RS19950 0.36 +0.3
961,383 - UW163_RS19950 0.36 -0.6
961,499 + UW163_RS19950 0.56 -0.5
961,499 + UW163_RS19950 0.56 -0.1
961,499 + UW163_RS19950 0.56 +0.1
961,500 - UW163_RS19950 0.56 +0.1
961,500 - +0.2
961,500 - UW163_RS19950 0.56 -0.0
961,500 - UW163_RS19950 0.56 -0.4
961,500 - UW163_RS19950 0.56 -0.4
961,501 - UW163_RS19950 0.56 +0.2
961,610 + UW163_RS19950 0.74 +0.8
961,790 + -1.6
961,791 - +2.1
961,791 - -0.1
961,959 + -0.2
961,959 + -1.0
961,959 + +0.5

Or see this region's nucleotide sequence