Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS18580 and UW163_RS18585 are separated by 77 nucleotides UW163_RS18585 and UW163_RS18590 are separated by 261 nucleotides UW163_RS18590 and UW163_RS18595 are separated by 30 nucleotides UW163_RS18595 and UW163_RS18600 are separated by 112 nucleotides
UW163_RS18580: UW163_RS18580 - alkene reductase, at 573,976 to 575,085
_RS18580
UW163_RS18585: UW163_RS18585 - epimerase, at 575,163 to 575,813
_RS18585
UW163_RS18590: UW163_RS18590 - DUF2784 domain-containing protein, at 576,075 to 576,443
_RS18590
UW163_RS18595: UW163_RS18595 - transcriptional regulator, at 576,474 to 576,905
_RS18595
UW163_RS18600: UW163_RS18600 - FMN-dependent NADH-azoreductase, at 577,018 to 577,638
_RS18600
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1
2 at 575.155 kb on + strand at 575.155 kb on + strand at 575.155 kb on + strand at 575.155 kb on + strand at 575.155 kb on + strand at 575.155 kb on + strand at 575.156 kb on - strand at 575.156 kb on - strand at 575.156 kb on - strand at 575.162 kb on + strand at 575.163 kb on - strand at 575.163 kb on - strand at 575.180 kb on - strand at 575.180 kb on - strand at 575.409 kb on + strand, within UW163_RS18585 at 575.409 kb on + strand, within UW163_RS18585 at 575.410 kb on - strand, within UW163_RS18585 at 575.582 kb on + strand, within UW163_RS18585 at 575.583 kb on - strand, within UW163_RS18585 at 575.583 kb on - strand, within UW163_RS18585 at 575.583 kb on - strand, within UW163_RS18585 at 575.628 kb on + strand, within UW163_RS18585 at 575.628 kb on + strand, within UW163_RS18585 at 575.628 kb on + strand, within UW163_RS18585 at 575.629 kb on - strand, within UW163_RS18585 at 575.629 kb on - strand, within UW163_RS18585 at 575.629 kb on - strand, within UW163_RS18585 at 575.629 kb on - strand, within UW163_RS18585 at 575.629 kb on - strand, within UW163_RS18585 at 575.743 kb on - strand, within UW163_RS18585 at 575.743 kb on - strand, within UW163_RS18585 at 575.743 kb on - strand, within UW163_RS18585 at 575.812 kb on - strand at 575.812 kb on - strand at 575.862 kb on + strand at 576.133 kb on + strand, within UW163_RS18590 at 576.134 kb on - strand, within UW163_RS18590 at 576.166 kb on + strand, within UW163_RS18590 at 576.166 kb on + strand, within UW163_RS18590 at 576.166 kb on + strand, within UW163_RS18590 at 576.167 kb on - strand, within UW163_RS18590 at 576.167 kb on - strand, within UW163_RS18590 at 576.167 kb on - strand, within UW163_RS18590 at 576.169 kb on + strand, within UW163_RS18590 at 576.169 kb on + strand, within UW163_RS18590 at 576.169 kb on + strand, within UW163_RS18590 at 576.170 kb on - strand, within UW163_RS18590 at 576.799 kb on + strand, within UW163_RS18595 at 576.800 kb on - strand, within UW163_RS18595 at 576.800 kb on - strand, within UW163_RS18595 at 576.800 kb on - strand, within UW163_RS18595 at 576.800 kb on - strand, within UW163_RS18595 at 576.882 kb on + strand at 576.883 kb on - strand at 576.929 kb on - strand at 576.941 kb on + strand at 576.941 kb on + strand at 576.941 kb on + strand at 576.941 kb on + strand at 576.942 kb on - strand at 576.942 kb on - strand at 576.972 kb on - strand at 576.972 kb on - strand at 576.973 kb on + strand at 576.974 kb on - strand at 576.982 kb on + strand at 577.003 kb on + strand at 577.003 kb on + strand at 577.004 kb on - strand at 577.125 kb on + strand, within UW163_RS18600 at 577.168 kb on - strand, within UW163_RS18600 at 577.168 kb on - strand, within UW163_RS18600 at 577.180 kb on + strand, within UW163_RS18600 at 577.378 kb on + strand, within UW163_RS18600 at 577.378 kb on + strand, within UW163_RS18600 at 577.379 kb on - strand, within UW163_RS18600
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 575,155 + -0.0 575,155 + -1.0 575,155 + +0.2 575,155 + +0.5 575,155 + +1.7 575,155 + +1.1 575,156 - +0.1 575,156 - -0.2 575,156 - -0.3 575,162 + +1.5 575,163 - -0.3 575,163 - +0.7 575,180 - +1.1 575,180 - -0.5 575,409 + UW163_RS18585 0.38 -0.6 575,409 + UW163_RS18585 0.38 -0.2 575,410 - UW163_RS18585 0.38 -0.6 575,582 + UW163_RS18585 0.64 -0.6 575,583 - UW163_RS18585 0.65 -0.5 575,583 - UW163_RS18585 0.65 -0.2 575,583 - UW163_RS18585 0.65 +0.1 575,628 + UW163_RS18585 0.71 -0.8 575,628 + UW163_RS18585 0.71 +0.0 575,628 + UW163_RS18585 0.71 +0.0 575,629 - UW163_RS18585 0.72 +0.1 575,629 - UW163_RS18585 0.72 -0.2 575,629 - UW163_RS18585 0.72 +0.3 575,629 - UW163_RS18585 0.72 -1.6 575,629 - UW163_RS18585 0.72 +1.0 575,743 - UW163_RS18585 0.89 +0.4 575,743 - UW163_RS18585 0.89 +0.9 575,743 - UW163_RS18585 0.89 +0.1 575,812 - -1.1 575,812 - -0.4 575,862 + +0.3 576,133 + UW163_RS18590 0.16 +0.4 576,134 - UW163_RS18590 0.16 +0.8 576,166 + UW163_RS18590 0.25 +0.7 576,166 + UW163_RS18590 0.25 -0.8 576,166 + UW163_RS18590 0.25 -1.4 576,167 - UW163_RS18590 0.25 +0.5 576,167 - UW163_RS18590 0.25 +0.3 576,167 - UW163_RS18590 0.25 -1.8 576,169 + UW163_RS18590 0.25 -0.9 576,169 + UW163_RS18590 0.25 +0.8 576,169 + UW163_RS18590 0.25 -0.6 576,170 - UW163_RS18590 0.26 +0.4 576,799 + UW163_RS18595 0.75 +0.5 576,800 - UW163_RS18595 0.75 +0.9 576,800 - UW163_RS18595 0.75 +0.1 576,800 - UW163_RS18595 0.75 -0.5 576,800 - UW163_RS18595 0.75 -0.4 576,882 + -1.3 576,883 - -1.9 576,929 - +0.2 576,941 + -0.1 576,941 + -0.2 576,941 + -0.5 576,941 + +0.1 576,942 - -0.8 576,942 - +0.2 576,972 - +0.3 576,972 - +0.7 576,973 + +0.2 576,974 - +2.3 576,982 + +0.0 577,003 + +0.2 577,003 + +0.0 577,004 - -0.2 577,125 + UW163_RS18600 0.17 +0.4 577,168 - UW163_RS18600 0.24 +0.2 577,168 - UW163_RS18600 0.24 +0.2 577,180 + UW163_RS18600 0.26 +0.2 577,378 + UW163_RS18600 0.58 +0.8 577,378 + UW163_RS18600 0.58 +0.1 577,379 - UW163_RS18600 0.58 -0.0
Or see this region's nucleotide sequence