Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS16370 and UW163_RS16375 are separated by 136 nucleotides UW163_RS16375 and UW163_RS16380 are separated by 56 nucleotides
UW163_RS16370: UW163_RS16370 - RND transporter, at 32,050 to 33,576
_RS16370
UW163_RS16375: UW163_RS16375 - efflux RND transporter periplasmic adaptor subunit, at 33,713 to 34,942
_RS16375
UW163_RS16380: UW163_RS16380 - CusA/CzcA family heavy metal efflux RND transporter, at 34,999 to 38,157
_RS16380
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1 at 32.970 kb on + strand, within UW163_RS16370 at 32.971 kb on - strand, within UW163_RS16370 at 33.012 kb on - strand, within UW163_RS16370 at 33.012 kb on - strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.080 kb on + strand, within UW163_RS16370 at 33.081 kb on - strand, within UW163_RS16370 at 33.113 kb on + strand, within UW163_RS16370 at 33.113 kb on + strand at 33.113 kb on + strand, within UW163_RS16370 at 33.113 kb on + strand, within UW163_RS16370 at 33.114 kb on - strand, within UW163_RS16370 at 33.182 kb on + strand, within UW163_RS16370 at 33.183 kb on - strand, within UW163_RS16370 at 33.206 kb on + strand, within UW163_RS16370 at 33.206 kb on + strand, within UW163_RS16370 at 33.207 kb on - strand, within UW163_RS16370 at 33.207 kb on - strand, within UW163_RS16370 at 33.207 kb on - strand, within UW163_RS16370 at 33.207 kb on - strand, within UW163_RS16370 at 33.207 kb on - strand, within UW163_RS16370 at 33.434 kb on + strand at 33.434 kb on + strand at 33.567 kb on + strand at 33.651 kb on + strand at 33.653 kb on - strand at 33.841 kb on + strand, within UW163_RS16375 at 33.842 kb on + strand, within UW163_RS16375 at 33.843 kb on - strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.923 kb on + strand, within UW163_RS16375 at 33.924 kb on - strand, within UW163_RS16375 at 33.924 kb on - strand, within UW163_RS16375 at 33.924 kb on - strand, within UW163_RS16375 at 33.924 kb on - strand at 34.029 kb on - strand, within UW163_RS16375 at 34.029 kb on - strand, within UW163_RS16375 at 34.029 kb on - strand, within UW163_RS16375 at 34.271 kb on + strand, within UW163_RS16375 at 34.372 kb on + strand, within UW163_RS16375 at 34.898 kb on + strand at 34.898 kb on + strand at 34.993 kb on + strand at 35.090 kb on - strand at 35.090 kb on - strand at 35.114 kb on - strand at 35.188 kb on + strand at 35.188 kb on + strand at 35.189 kb on - strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.192 kb on - strand at 35.192 kb on - strand at 35.192 kb on - strand at 35.309 kb on - strand at 35.309 kb on - strand at 35.318 kb on - strand, within UW163_RS16380 at 35.548 kb on + strand, within UW163_RS16380 at 35.549 kb on - strand, within UW163_RS16380 at 35.549 kb on - strand, within UW163_RS16380 at 35.549 kb on - strand, within UW163_RS16380 at 35.585 kb on - strand, within UW163_RS16380 at 35.585 kb on - strand, within UW163_RS16380
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 32,970 + UW163_RS16370 0.60 -0.6 32,971 - UW163_RS16370 0.60 +0.5 33,012 - UW163_RS16370 0.63 -0.1 33,012 - UW163_RS16370 0.63 -0.2 33,080 + UW163_RS16370 0.67 +0.4 33,080 + UW163_RS16370 0.67 -1.0 33,080 + UW163_RS16370 0.67 -1.0 33,080 + UW163_RS16370 0.67 -1.4 33,080 + UW163_RS16370 0.67 +0.9 33,080 + UW163_RS16370 0.67 +0.6 33,080 + UW163_RS16370 0.67 +0.3 33,081 - UW163_RS16370 0.68 +0.1 33,113 + UW163_RS16370 0.70 -0.2 33,113 + +1.0 33,113 + UW163_RS16370 0.70 -1.0 33,113 + UW163_RS16370 0.70 -0.2 33,114 - UW163_RS16370 0.70 -0.1 33,182 + UW163_RS16370 0.74 +0.5 33,183 - UW163_RS16370 0.74 +0.3 33,206 + UW163_RS16370 0.76 -0.0 33,206 + UW163_RS16370 0.76 +0.1 33,207 - UW163_RS16370 0.76 -1.1 33,207 - UW163_RS16370 0.76 -0.3 33,207 - UW163_RS16370 0.76 +0.2 33,207 - UW163_RS16370 0.76 -0.1 33,207 - UW163_RS16370 0.76 +0.1 33,434 + -0.3 33,434 + -0.1 33,567 + -0.3 33,651 + +0.4 33,653 - +0.2 33,841 + UW163_RS16375 0.10 +0.2 33,842 + UW163_RS16375 0.10 +0.9 33,843 - UW163_RS16375 0.11 +0.1 33,923 + UW163_RS16375 0.17 +0.1 33,923 + UW163_RS16375 0.17 +1.4 33,923 + UW163_RS16375 0.17 +0.1 33,923 + UW163_RS16375 0.17 +0.2 33,923 + UW163_RS16375 0.17 +0.9 33,923 + UW163_RS16375 0.17 -1.3 33,923 + UW163_RS16375 0.17 +0.8 33,923 + UW163_RS16375 0.17 +0.3 33,924 - UW163_RS16375 0.17 -0.7 33,924 - UW163_RS16375 0.17 -0.6 33,924 - UW163_RS16375 0.17 +0.4 33,924 - +0.3 34,029 - UW163_RS16375 0.26 -1.3 34,029 - UW163_RS16375 0.26 +0.0 34,029 - UW163_RS16375 0.26 +0.2 34,271 + UW163_RS16375 0.45 +0.6 34,372 + UW163_RS16375 0.54 +0.5 34,898 + -0.9 34,898 + +0.1 34,993 + +0.3 35,090 - -0.3 35,090 - -0.3 35,114 - -0.3 35,188 + +0.1 35,188 + -0.4 35,189 - +0.1 35,191 + -0.3 35,191 + +0.0 35,191 + +0.1 35,191 + -1.2 35,191 + -0.3 35,192 - +1.7 35,192 - +0.7 35,192 - -0.9 35,309 - +1.6 35,309 - +0.1 35,318 - UW163_RS16380 0.10 -0.4 35,548 + UW163_RS16380 0.17 +0.4 35,549 - UW163_RS16380 0.17 +0.5 35,549 - UW163_RS16380 0.17 -0.8 35,549 - UW163_RS16380 0.17 -0.3 35,585 - UW163_RS16380 0.19 -1.0 35,585 - UW163_RS16380 0.19 +0.0
Or see this region's nucleotide sequence