Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS10755

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS10740 and UW163_RS10745 are separated by 181 nucleotidesUW163_RS10745 and UW163_RS10750 are separated by 167 nucleotidesUW163_RS10750 and UW163_RS10755 are separated by 6 nucleotidesUW163_RS10755 and UW163_RS10760 are separated by 1 nucleotidesUW163_RS10760 and UW163_RS10765 are separated by 13 nucleotides UW163_RS10740: UW163_RS10740 - preprotein translocase subunit SecG, at 2,327,833 to 2,328,183 _RS10740 UW163_RS10745: UW163_RS10745 - tRNA-Leu, at 2,328,365 to 2,328,449 _RS10745 UW163_RS10750: UW163_RS10750 - NADH-quinone oxidoreductase subunit A, at 2,328,617 to 2,328,976 _RS10750 UW163_RS10755: UW163_RS10755 - NADH-quinone oxidoreductase subunit B, at 2,328,983 to 2,329,465 _RS10755 UW163_RS10760: UW163_RS10760 - NADH-quinone oxidoreductase subunit C, at 2,329,467 to 2,330,069 _RS10760 UW163_RS10765: UW163_RS10765 - NADH-quinone oxidoreductase subunit NuoD, at 2,330,083 to 2,331,336 _RS10765 Position (kb) 2328 2329 2330Strain fitness (log2 ratio) -1 0 1at 2328.800 kb on + strand, within UW163_RS10750

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,328,800 + UW163_RS10750 0.51 -0.2

Or see this region's nucleotide sequence