Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS07925 and UW163_RS07930 are separated by 77 nucleotides UW163_RS07930 and UW163_RS07935 are separated by 121 nucleotides UW163_RS07935 and UW163_RS07940 are separated by 105 nucleotides
UW163_RS07925: UW163_RS07925 - protein translocase subunit SecF, at 1,703,733 to 1,704,701
_RS07925
UW163_RS07930: UW163_RS07930 - protein translocase subunit SecD, at 1,704,779 to 1,706,662
_RS07930
UW163_RS07935: UW163_RS07935 - preprotein translocase subunit YajC, at 1,706,784 to 1,707,119
_RS07935
UW163_RS07940: UW163_RS07940 - tRNA guanosine(34) transglycosylase Tgt, at 1,707,225 to 1,708,376
_RS07940
Position (kb) 1704
1705
1706
1707 Strain fitness (log2 ratio) -1
0
1 at 1706.786 kb on - strand at 1706.879 kb on - strand, within UW163_RS07935 at 1707.098 kb on - strand at 1707.173 kb on - strand at 1707.325 kb on + strand at 1707.326 kb on - strand at 1707.328 kb on + strand at 1707.328 kb on + strand at 1707.329 kb on - strand at 1707.425 kb on - strand, within UW163_RS07940 at 1707.613 kb on + strand, within UW163_RS07940
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,706,786 - -1.3 1,706,879 - UW163_RS07935 0.28 -0.8 1,707,098 - -0.1 1,707,173 - -0.4 1,707,325 + -1.0 1,707,326 - -1.0 1,707,328 + +0.3 1,707,328 + +0.7 1,707,329 - +0.0 1,707,425 - UW163_RS07940 0.17 -1.5 1,707,613 + UW163_RS07940 0.34 -0.7
Or see this region's nucleotide sequence