Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS06930

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS06925 and UW163_RS06930 overlap by 4 nucleotidesUW163_RS06930 and UW163_RS06935 overlap by 2 nucleotides UW163_RS06925: UW163_RS06925 - transposase, at 1,479,780 to 1,480,568 _RS06925 UW163_RS06930: UW163_RS06930 - IS21 family transposase, at 1,480,565 to 1,481,581 _RS06930 UW163_RS06935: UW163_RS06935 - sensor histidine kinase, at 1,481,580 to 1,482,875 _RS06935 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -1 0 1at 1481.925 kb on + strand, within UW163_RS06935at 1482.512 kb on + strand, within UW163_RS06935

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,481,925 + UW163_RS06935 0.27 -0.5
1,482,512 + UW163_RS06935 0.72 +0.0

Or see this region's nucleotide sequence