Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS06925

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS06920 and UW163_RS06925 are separated by 728 nucleotidesUW163_RS06925 and UW163_RS06930 overlap by 4 nucleotides UW163_RS06920: UW163_RS06920 - alpha/beta hydrolase, at 1,478,272 to 1,479,051 _RS06920 UW163_RS06925: UW163_RS06925 - transposase, at 1,479,780 to 1,480,568 _RS06925 UW163_RS06930: UW163_RS06930 - IS21 family transposase, at 1,480,565 to 1,481,581 _RS06930 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -1 0 1at 1479.050 kb on - strandat 1479.097 kb on + strandat 1479.098 kb on - strandat 1479.155 kb on + strandat 1479.155 kb on + strandat 1479.156 kb on - strandat 1479.378 kb on + strandat 1479.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,479,050 - -0.2
1,479,097 + +0.7
1,479,098 - +0.9
1,479,155 + -1.0
1,479,155 + +1.6
1,479,156 - -1.2
1,479,378 + -0.2
1,479,506 - -0.8

Or see this region's nucleotide sequence