Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03215 and UW163_RS03220 are separated by 348 nucleotides UW163_RS03220 and UW163_RS03225 are separated by 158 nucleotides
UW163_RS03215: UW163_RS03215 - methylmalonyl-CoA mutase, at 663,964 to 667,263
_RS03215
UW163_RS03220: UW163_RS03220 - hypothetical protein, at 667,612 to 668,679
_RS03220
UW163_RS03225: UW163_RS03225 - DUF427 domain-containing protein, at 668,838 to 669,194
_RS03225
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 666.863 kb on + strand, within UW163_RS03215 at 666.864 kb on - strand, within UW163_RS03215 at 666.864 kb on - strand, within UW163_RS03215 at 666.882 kb on - strand, within UW163_RS03215 at 666.946 kb on - strand at 666.984 kb on - strand at 666.993 kb on - strand at 667.013 kb on + strand at 667.013 kb on + strand at 667.194 kb on + strand at 667.194 kb on + strand at 667.349 kb on + strand at 667.424 kb on + strand at 667.425 kb on - strand at 667.502 kb on - strand at 667.568 kb on + strand at 667.706 kb on - strand at 668.068 kb on + strand, within UW163_RS03220 at 668.069 kb on - strand, within UW163_RS03220 at 668.440 kb on + strand, within UW163_RS03220 at 668.440 kb on + strand, within UW163_RS03220 at 668.440 kb on + strand, within UW163_RS03220 at 668.440 kb on + strand, within UW163_RS03220 at 668.440 kb on + strand, within UW163_RS03220 at 668.441 kb on - strand, within UW163_RS03220 at 668.441 kb on - strand, within UW163_RS03220 at 668.441 kb on - strand, within UW163_RS03220 at 668.443 kb on - strand, within UW163_RS03220 at 668.443 kb on - strand, within UW163_RS03220 at 668.585 kb on + strand at 668.586 kb on - strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.976 kb on + strand, within UW163_RS03225 at 668.976 kb on + strand, within UW163_RS03225 at 668.976 kb on + strand, within UW163_RS03225 at 668.976 kb on + strand, within UW163_RS03225 at 668.977 kb on - strand, within UW163_RS03225 at 668.977 kb on - strand, within UW163_RS03225 at 669.043 kb on - strand, within UW163_RS03225 at 669.060 kb on + strand, within UW163_RS03225 at 669.063 kb on + strand, within UW163_RS03225 at 669.063 kb on + strand, within UW163_RS03225 at 669.063 kb on + strand, within UW163_RS03225 at 669.063 kb on + strand, within UW163_RS03225 at 669.063 kb on + strand, within UW163_RS03225 at 669.111 kb on + strand, within UW163_RS03225 at 669.111 kb on + strand, within UW163_RS03225 at 669.111 kb on + strand, within UW163_RS03225 at 669.112 kb on - strand, within UW163_RS03225 at 669.112 kb on - strand, within UW163_RS03225 at 669.183 kb on - strand at 669.472 kb on + strand at 669.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 666,863 + UW163_RS03215 0.88 -1.5 666,864 - UW163_RS03215 0.88 -0.0 666,864 - UW163_RS03215 0.88 +0.8 666,882 - UW163_RS03215 0.88 +0.2 666,946 - -0.2 666,984 - -0.4 666,993 - +0.4 667,013 + +1.6 667,013 + -0.2 667,194 + -0.3 667,194 + -0.1 667,349 + -0.1 667,424 + -0.4 667,425 - -0.2 667,502 - +0.7 667,568 + -0.9 667,706 - +1.0 668,068 + UW163_RS03220 0.43 -0.0 668,069 - UW163_RS03220 0.43 +0.2 668,440 + UW163_RS03220 0.78 +0.2 668,440 + UW163_RS03220 0.78 +0.2 668,440 + UW163_RS03220 0.78 +0.5 668,440 + UW163_RS03220 0.78 +0.0 668,440 + UW163_RS03220 0.78 +0.7 668,441 - UW163_RS03220 0.78 +0.2 668,441 - UW163_RS03220 0.78 +0.4 668,441 - UW163_RS03220 0.78 +0.4 668,443 - UW163_RS03220 0.78 +0.3 668,443 - UW163_RS03220 0.78 +0.2 668,585 + +0.2 668,586 - -0.0 668,597 - +0.9 668,597 - +0.4 668,781 + +0.2 668,781 + -0.1 668,781 + +0.4 668,781 + -1.8 668,781 + -0.4 668,976 + UW163_RS03225 0.39 +1.0 668,976 + UW163_RS03225 0.39 -2.9 668,976 + UW163_RS03225 0.39 -0.4 668,976 + UW163_RS03225 0.39 +0.2 668,977 - UW163_RS03225 0.39 -1.2 668,977 - UW163_RS03225 0.39 -1.5 669,043 - UW163_RS03225 0.57 -0.9 669,060 + UW163_RS03225 0.62 -0.3 669,063 + UW163_RS03225 0.63 -0.1 669,063 + UW163_RS03225 0.63 -1.3 669,063 + UW163_RS03225 0.63 -1.0 669,063 + UW163_RS03225 0.63 -1.1 669,063 + UW163_RS03225 0.63 +1.4 669,111 + UW163_RS03225 0.76 +0.0 669,111 + UW163_RS03225 0.76 -0.4 669,111 + UW163_RS03225 0.76 +0.1 669,112 - UW163_RS03225 0.77 -0.3 669,112 - UW163_RS03225 0.77 -0.8 669,183 - +0.2 669,472 + +0.0 669,488 - +0.4
Or see this region's nucleotide sequence