Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS01935

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS01925 and UW163_RS01930 are separated by 17 nucleotidesUW163_RS01930 and UW163_RS01935 overlap by 1 nucleotidesUW163_RS01935 and UW163_RS01940 are separated by 16 nucleotidesUW163_RS01940 and UW163_RS01945 overlap by 4 nucleotides UW163_RS01925: UW163_RS01925 - membrane protein, at 405,094 to 405,807 _RS01925 UW163_RS01930: UW163_RS01930 - histidine phosphatase family protein, at 405,825 to 406,505 _RS01930 UW163_RS01935: UW163_RS01935 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 406,505 to 407,140 _RS01935 UW163_RS01940: UW163_RS01940 - D-tyrosyl-tRNA(Tyr) deacylase, at 407,157 to 407,657 _RS01940 UW163_RS01945: UW163_RS01945 - tyrosine--tRNA ligase, at 407,654 to 408,925 _RS01945 Position (kb) 406 407 408Strain fitness (log2 ratio) -1 0 1at 405.508 kb on + strand, within UW163_RS01925at 405.509 kb on - strand, within UW163_RS01925at 405.509 kb on - strand, within UW163_RS01925at 405.610 kb on + strand, within UW163_RS01925at 405.625 kb on + strand, within UW163_RS01925at 405.625 kb on + strand, within UW163_RS01925at 405.625 kb on + strand, within UW163_RS01925at 405.625 kb on + strand, within UW163_RS01925at 405.625 kb on + strand, within UW163_RS01925at 405.626 kb on - strand, within UW163_RS01925at 405.673 kb on + strand, within UW163_RS01925at 405.673 kb on + strand, within UW163_RS01925at 405.673 kb on + strand, within UW163_RS01925at 405.673 kb on + strand, within UW163_RS01925at 405.674 kb on - strand, within UW163_RS01925at 405.718 kb on + strand, within UW163_RS01925at 405.718 kb on + strand, within UW163_RS01925at 405.761 kb on - strandat 405.761 kb on - strandat 406.539 kb on + strandat 406.540 kb on - strandat 406.540 kb on - strandat 406.648 kb on - strand, within UW163_RS01935at 406.660 kb on + strand, within UW163_RS01935at 406.660 kb on + strand, within UW163_RS01935at 406.660 kb on + strand, within UW163_RS01935at 406.661 kb on - strand, within UW163_RS01935at 406.661 kb on - strand, within UW163_RS01935at 406.661 kb on - strand, within UW163_RS01935at 406.662 kb on + strand, within UW163_RS01935at 406.663 kb on - strand, within UW163_RS01935at 406.714 kb on - strand, within UW163_RS01935at 406.714 kb on - strand, within UW163_RS01935at 406.714 kb on - strand, within UW163_RS01935at 406.716 kb on + strand, within UW163_RS01935at 406.716 kb on + strand, within UW163_RS01935at 406.758 kb on + strand, within UW163_RS01935at 406.759 kb on - strand, within UW163_RS01935at 406.759 kb on - strand, within UW163_RS01935at 406.759 kb on - strand, within UW163_RS01935at 407.089 kb on - strandat 407.111 kb on - strandat 407.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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405,508 + UW163_RS01925 0.58 -0.7
405,509 - UW163_RS01925 0.58 -0.0
405,509 - UW163_RS01925 0.58 +0.1
405,610 + UW163_RS01925 0.72 -0.2
405,625 + UW163_RS01925 0.74 +0.1
405,625 + UW163_RS01925 0.74 -0.1
405,625 + UW163_RS01925 0.74 -0.2
405,625 + UW163_RS01925 0.74 +0.1
405,625 + UW163_RS01925 0.74 -1.7
405,626 - UW163_RS01925 0.75 -0.2
405,673 + UW163_RS01925 0.81 -0.3
405,673 + UW163_RS01925 0.81 +0.5
405,673 + UW163_RS01925 0.81 +0.4
405,673 + UW163_RS01925 0.81 -0.1
405,674 - UW163_RS01925 0.81 -1.2
405,718 + UW163_RS01925 0.87 -1.1
405,718 + UW163_RS01925 0.87 -1.4
405,761 - +1.3
405,761 - -1.4
406,539 + -0.6
406,540 - +0.0
406,540 - -0.5
406,648 - UW163_RS01935 0.22 +0.1
406,660 + UW163_RS01935 0.24 +1.1
406,660 + UW163_RS01935 0.24 +0.3
406,660 + UW163_RS01935 0.24 -0.3
406,661 - UW163_RS01935 0.25 +0.6
406,661 - UW163_RS01935 0.25 +1.2
406,661 - UW163_RS01935 0.25 -0.0
406,662 + UW163_RS01935 0.25 -0.8
406,663 - UW163_RS01935 0.25 -0.3
406,714 - UW163_RS01935 0.33 -0.2
406,714 - UW163_RS01935 0.33 +0.0
406,714 - UW163_RS01935 0.33 -0.3
406,716 + UW163_RS01935 0.33 -0.2
406,716 + UW163_RS01935 0.33 +0.1
406,758 + UW163_RS01935 0.40 -0.2
406,759 - UW163_RS01935 0.40 -0.2
406,759 - UW163_RS01935 0.40 -0.5
406,759 - UW163_RS01935 0.40 -0.4
407,089 - -0.9
407,111 - -0.2
407,111 - -0.3

Or see this region's nucleotide sequence