Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01295 and UW163_RS01300 are separated by 192 nucleotides UW163_RS01300 and UW163_RS01305 are separated by 251 nucleotides UW163_RS01305 and UW163_RS01310 are separated by 416 nucleotides
UW163_RS01295: UW163_RS01295 - PLP-dependent aminotransferase family protein, at 260,120 to 261,601
_RS01295
UW163_RS01300: UW163_RS01300 - hypothetical protein, at 261,794 to 262,114
_RS01300
UW163_RS01305: UW163_RS01305 - hypothetical protein, at 262,366 to 262,596
_RS01305
UW163_RS01310: UW163_RS01310 - hypothetical protein, at 263,013 to 263,651
_RS01310
Position (kb) 262
263 Strain fitness (log2 ratio) -1
0
1 at 261.519 kb on + strand at 261.520 kb on - strand at 261.541 kb on - strand at 261.618 kb on + strand at 261.662 kb on + strand at 261.662 kb on + strand at 261.662 kb on + strand at 261.663 kb on - strand at 261.663 kb on - strand at 261.682 kb on - strand at 261.687 kb on - strand at 261.714 kb on + strand at 261.715 kb on - strand at 261.764 kb on + strand at 261.764 kb on + strand at 261.764 kb on + strand at 262.420 kb on + strand, within UW163_RS01305 at 262.726 kb on + strand at 262.726 kb on + strand at 262.726 kb on + strand at 262.776 kb on + strand at 263.268 kb on + strand, within UW163_RS01310 at 263.268 kb on + strand, within UW163_RS01310 at 263.268 kb on + strand, within UW163_RS01310 at 263.268 kb on + strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.269 kb on - strand, within UW163_RS01310 at 263.270 kb on + strand, within UW163_RS01310
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 261,519 + -1.5 261,520 - +0.3 261,541 - -0.0 261,618 + -0.3 261,662 + -0.4 261,662 + -0.1 261,662 + -0.4 261,663 - -0.2 261,663 - -0.3 261,682 - -0.7 261,687 - -0.3 261,714 + +0.4 261,715 - +0.1 261,764 + +0.8 261,764 + -0.2 261,764 + -0.8 262,420 + UW163_RS01305 0.23 -0.3 262,726 + -0.8 262,726 + -0.8 262,726 + -0.6 262,776 + -0.6 263,268 + UW163_RS01310 0.40 +0.3 263,268 + UW163_RS01310 0.40 +0.2 263,268 + UW163_RS01310 0.40 -0.5 263,268 + UW163_RS01310 0.40 -0.4 263,269 - UW163_RS01310 0.40 +0.0 263,269 - UW163_RS01310 0.40 -0.1 263,269 - UW163_RS01310 0.40 +1.1 263,269 - UW163_RS01310 0.40 -0.4 263,269 - UW163_RS01310 0.40 +0.6 263,269 - UW163_RS01310 0.40 +0.1 263,269 - UW163_RS01310 0.40 +0.2 263,269 - UW163_RS01310 0.40 +0.3 263,270 + UW163_RS01310 0.40 -0.2
Or see this region's nucleotide sequence