Strain Fitness in Pseudomonas sp. RS175 around PFR28_04058

Experiment: a-Ketoglutaric carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric carbon 10 mM
4,633,580	+		PFR28_04057	0.29	+0.4
4,633,580	+		PFR28_04057	0.29	-0.2
4,633,580	+		PFR28_04057	0.29	+0.4
4,633,580	+		PFR28_04057	0.29	-1.7
4,633,580	+		PFR28_04057	0.29	-0.4
4,633,581	-		PFR28_04057	0.29	-0.9
4,633,581	-		PFR28_04057	0.29	+0.3
4,633,581	-		PFR28_04057	0.29	+0.7
4,633,581	-		PFR28_04057	0.29	+3.0
4,633,581	-		PFR28_04057	0.29	-0.0
4,633,581	-		PFR28_04057	0.29	+0.8
4,633,581	-		PFR28_04057	0.29	-0.3
4,633,581	-		PFR28_04057	0.29	-0.3
4,633,671	+		PFR28_04057	0.38	+0.5
4,633,672	-		PFR28_04057	0.38	+0.4
4,633,909	+		PFR28_04057	0.62	-0.5
4,633,910	-		PFR28_04057	0.62	-0.9
4,633,935	+		PFR28_04057	0.65	+1.4
4,633,935	+		PFR28_04057	0.65	+1.4
4,633,935	+		PFR28_04057	0.65	+0.1
4,633,936	-		PFR28_04057	0.65	-2.1
4,633,943	+		PFR28_04057	0.65	+0.6
4,633,943	+		PFR28_04057	0.65	+0.6
4,633,967	-		PFR28_04057	0.68	-0.3
4,633,967	-		PFR28_04057	0.68	-0.9
4,633,967	-		PFR28_04057	0.68	+0.1
4,633,981	+		PFR28_04057	0.69	-0.3
4,633,981	+		PFR28_04057	0.69	+0.1
4,634,009	+		PFR28_04057	0.72	+0.1
4,634,009	+		PFR28_04057	0.72	+0.3
4,634,009	+		PFR28_04057	0.72	+0.4
4,634,010	-		PFR28_04057	0.72	-0.5
4,634,010	-		PFR28_04057	0.72	-0.6
4,634,010	-		PFR28_04057	0.72	+1.1
4,634,010	-		PFR28_04057	0.72	+0.1
4,634,111	-		PFR28_04057	0.82	-0.5
4,634,343	+				-0.0
4,634,344	-				-1.1
4,634,445	-		PFR28_04058	0.19	-0.2
4,634,511	-		PFR28_04058	0.27	+0.3
4,634,511	-		PFR28_04058	0.27	-0.2
4,634,511	-		PFR28_04058	0.27	-1.0
4,634,511	-		PFR28_04058	0.27	+0.3
4,634,553	-		PFR28_04058	0.33	-0.3
4,634,553	-		PFR28_04058	0.33	-0.4
4,634,724	-		PFR28_04058	0.55	-0.5
4,634,835	+		PFR28_04058	0.69	-0.3
4,634,893	+		PFR28_04058	0.77	+0.4
4,634,893	+		PFR28_04058	0.77	+0.3
4,634,893	+		PFR28_04058	0.77	-2.7
4,634,893	+		PFR28_04058	0.77	-1.0
4,634,893	+		PFR28_04058	0.77	-0.3
4,634,893	+		PFR28_04058	0.77	+1.3
4,634,893	+		PFR28_04058	0.77	+0.0
4,634,893	+		PFR28_04058	0.77	+1.1
4,634,893	+		PFR28_04058	0.77	+1.4
4,634,893	+		PFR28_04058	0.77	-2.0
4,634,893	+		PFR28_04058	0.77	-1.9
4,634,894	-		PFR28_04058	0.77	+0.9
4,634,894	-		PFR28_04058	0.77	+0.1
4,634,894	-		PFR28_04058	0.77	-0.1
4,634,894	-		PFR28_04058	0.77	-0.1
4,634,894	-		PFR28_04058	0.77	-0.3
4,634,894	-		PFR28_04058	0.77	-1.0
4,634,894	-		PFR28_04058	0.77	-0.0
4,634,894	-		PFR28_04058	0.77	+0.4
4,634,894	-		PFR28_04058	0.77	+0.4
4,634,894	-		PFR28_04058	0.77	+0.7
4,634,894	-		PFR28_04058	0.77	+2.0
4,634,894	-		PFR28_04058	0.77	-0.3
4,634,909	-		PFR28_04058	0.79	-1.2
4,635,069	+				+1.0
4,635,069	+				-1.3
4,635,069	+				-0.3
4,635,069	+				+1.7
4,635,069	+				+1.7
4,635,069	+				+0.6
4,635,069	+				-0.2
4,635,069	+				-0.3
4,635,069	+				+0.3
4,635,070	-				-1.1
4,635,070	-				+0.2
4,635,070	-				+0.2
4,635,070	-				-1.4
4,635,070	-				-1.1
4,635,070	-				+0.1
4,635,070	-				+0.7
4,635,070	-				-0.6
4,635,086	+				+1.6
4,635,086	+				+1.1
4,635,086	+				+0.0
4,635,086	+				+0.5
4,635,087	-				-0.1
4,635,087	-				-0.8
4,635,087	-				+0.1
4,635,087	-				-0.3
4,635,087	-				-0.5
4,635,087	-				-0.4
4,635,262	+		PFR28_04059	0.28	+1.7
4,635,263	-		PFR28_04059	0.29	+2.3
4,635,263	-		PFR28_04059	0.29	+3.0
4,635,264	+		PFR28_04059	0.29	-0.6
4,635,264	+		PFR28_04059	0.29	+2.4
4,635,264	+		PFR28_04059	0.29	+2.1
4,635,264	+		PFR28_04059	0.29	+2.5
4,635,264	+		PFR28_04059	0.29	+2.2
4,635,264	+		PFR28_04059	0.29	+1.2
4,635,264	+		PFR28_04059	0.29	+2.8
4,635,264	+		PFR28_04059	0.29	+1.9
4,635,264	+		PFR28_04059	0.29	+2.2
4,635,265	-		PFR28_04059	0.29	-0.1
4,635,265	-		PFR28_04059	0.29	+2.2
4,635,265	-		PFR28_04059	0.29	+1.9
4,635,265	-		PFR28_04059	0.29	+2.3
4,635,265	-		PFR28_04059	0.29	+2.4
4,635,265	-		PFR28_04059	0.29	+3.1
4,635,265	-		PFR28_04059	0.29	+2.7
4,635,265	-		PFR28_04059	0.29	+2.3
4,635,265	-		PFR28_04059	0.29	+2.3
4,635,419	+		PFR28_04059	0.52	+0.9
4,635,419	+		PFR28_04059	0.52	+2.4
4,635,419	+		PFR28_04059	0.52	+2.9
4,635,419	+		PFR28_04059	0.52	+1.0
4,635,419	+		PFR28_04059	0.52	+2.5
4,635,419	+		PFR28_04059	0.52	+2.6
4,635,419	+		PFR28_04059	0.52	+2.2
4,635,419	+		PFR28_04059	0.52	+2.2
4,635,419	+		PFR28_04059	0.52	+3.1
4,635,419	+		PFR28_04059	0.52	+2.3
4,635,419	+		PFR28_04059	0.52	+2.8
4,635,419	+		PFR28_04059	0.52	+1.3
4,635,419	+		PFR28_04059	0.52	+2.5
4,635,419	+		PFR28_04059	0.52	+0.7
4,635,419	+		PFR28_04059	0.52	+2.5
4,635,419	+		PFR28_04059	0.52	+2.3
4,635,420	-		PFR28_04059	0.52	+0.7
4,635,420	-		PFR28_04059	0.52	+2.5
4,635,420	-		PFR28_04059	0.52	+2.6
4,635,420	-		PFR28_04059	0.52	+2.1
4,635,420	-		PFR28_04059	0.52	+2.5
4,635,420	-		PFR28_04059	0.52	+1.8
4,635,420	-		PFR28_04059	0.52	+2.3
4,635,420	-		PFR28_04059	0.52	+3.0
4,635,420	-		PFR28_04059	0.52	+2.5
4,635,420	-		PFR28_04059	0.52	+2.7
4,635,420	-		PFR28_04059	0.52	+3.1
4,635,420	-		PFR28_04059	0.52	+2.4
4,635,420	-		PFR28_04059	0.52	+2.2
4,635,420	-		PFR28_04059	0.52	+1.3
4,635,420	-		PFR28_04059	0.52	+2.1
4,635,420	-		PFR28_04059	0.52	+2.1
4,635,420	-		PFR28_04059	0.52	+2.7
4,635,420	-		PFR28_04059	0.52	+3.3
4,635,420	-		PFR28_04059	0.52	+2.2
4,635,420	-		PFR28_04059	0.52	+1.4
4,635,420	-		PFR28_04059	0.52	+2.5
4,635,420	-		PFR28_04059	0.52	+2.2
4,635,421	+		PFR28_04059	0.52	+2.8
4,635,421	+		PFR28_04059	0.52	+3.0
4,635,421	+		PFR28_04059	0.52	+2.5
4,635,421	+		PFR28_04059	0.52	+2.2
4,635,421	+		PFR28_04059	0.52	+1.8
4,635,421	+		PFR28_04059	0.52	+2.0
4,635,421	+		PFR28_04059	0.52	+2.0
4,635,421	+		PFR28_04059	0.52	+2.0
4,635,421	+		PFR28_04059	0.52	+2.0
4,635,421	+		PFR28_04059	0.52	+2.2
4,635,422	-		PFR28_04059	0.52	+3.0
4,635,422	-		PFR28_04059	0.52	+2.0
4,635,422	-		PFR28_04059	0.52	+0.9
4,635,422	-		PFR28_04059	0.52	+2.1
4,635,422	-		PFR28_04059	0.52	+1.4
4,635,422	-		PFR28_04059	0.52	+1.8
4,635,422	-		PFR28_04059	0.52	+2.9
4,635,422	-		PFR28_04059	0.52	+2.7
4,635,422	-		PFR28_04059	0.52	+1.6
4,635,636	+		PFR28_04059	0.84	-0.1
4,635,636	+		PFR28_04059	0.84	+1.4
4,635,826	+				+0.9
4,635,826	+				+0.9
4,635,826	+				+2.2
4,635,826	+				+1.0
4,635,826	+				-0.7
4,635,826	+				+1.1
4,635,826	+				+1.7
4,635,826	+				+0.6
4,635,826	+				+0.8
4,635,826	+				+1.0
4,635,826	+				+1.2
4,635,826	+				+0.8
4,635,826	+				+0.9
4,635,826	+				+1.0
4,635,826	+				-0.0
4,635,826	+				+1.7
4,635,826	+				+1.1
4,635,826	+				+0.6
4,635,826	+				+0.3
4,635,827	-				+1.2
4,635,827	-				+0.1
4,635,827	-				+1.4
4,635,827	-				+0.7
4,635,827	-				+1.3
4,635,827	-				+0.6
4,635,827	-				+0.3
4,635,827	-				+1.1
4,635,827	-				+0.7
4,635,827	-				+1.1
4,635,827	-				+0.4
4,635,827	-				+0.3
4,635,827	-				+3.9
4,635,827	-				+0.4
4,635,827	-				+0.3
4,635,827	-				+1.0
4,635,827	-				+1.3
4,635,827	-				+1.5
4,635,827	-				+0.3
4,635,827	-				+0.9
4,635,828	+				+0.7
4,635,828	+				+0.5
4,635,828	+				+1.5
4,635,829	-				+0.6
4,635,829	-				+0.1
4,635,829	-				+0.7
4,635,829	-				-0.2
4,635,829	-				+0.7
4,635,829	-				+0.6
4,635,829	-				-0.1
4,635,830	+				+0.1
4,635,830	+				+0.7
4,635,830	+				+0.8
4,635,830	+				+0.7
4,635,831	-				+0.7
4,635,831	-				+2.2
4,635,831	-				-0.4
4,635,831	-				+1.7
4,635,831	-				+1.1
4,635,831	-				-1.1
4,635,831	-				+0.1
4,635,831	-				+1.6
4,636,007	+		PFR28_04060	0.26	+0.7
4,636,008	-		PFR28_04060	0.26	+1.1
4,636,008	-		PFR28_04060	0.26	+0.8
4,636,008	-		PFR28_04060	0.26	+0.7