Experiment: m.b. Chlorite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3254 and Echvi_3255 are separated by 10 nucleotides Echvi_3255 and Echvi_3256 are separated by 158 nucleotides
Echvi_3254: Echvi_3254 - hypothetical protein, at 3,859,207 to 3,860,187
_3254
Echvi_3255: Echvi_3255 - Predicted periplasmic protein, at 3,860,198 to 3,860,926
_3255
Echvi_3256: Echvi_3256 - AraC-type DNA-binding domain-containing proteins, at 3,861,085 to 3,862,128
_3256
Position (kb)
3860
3861 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3859.225 kb on + strand at 3859.259 kb on - strand at 3859.277 kb on + strand at 3859.277 kb on + strand at 3859.278 kb on - strand at 3859.278 kb on - strand at 3859.278 kb on - strand at 3859.278 kb on - strand at 3859.298 kb on + strand at 3859.318 kb on + strand, within Echvi_3254 at 3859.380 kb on + strand, within Echvi_3254 at 3859.381 kb on - strand, within Echvi_3254 at 3859.381 kb on - strand, within Echvi_3254 at 3859.406 kb on + strand, within Echvi_3254 at 3859.406 kb on + strand, within Echvi_3254 at 3859.406 kb on + strand, within Echvi_3254 at 3859.406 kb on + strand, within Echvi_3254 at 3859.407 kb on - strand, within Echvi_3254 at 3859.407 kb on - strand, within Echvi_3254 at 3859.419 kb on - strand, within Echvi_3254 at 3859.419 kb on - strand, within Echvi_3254 at 3859.421 kb on + strand, within Echvi_3254 at 3859.422 kb on - strand, within Echvi_3254 at 3859.424 kb on + strand, within Echvi_3254 at 3859.424 kb on + strand, within Echvi_3254 at 3859.425 kb on - strand, within Echvi_3254 at 3859.513 kb on - strand, within Echvi_3254 at 3859.514 kb on + strand, within Echvi_3254 at 3859.535 kb on + strand, within Echvi_3254 at 3859.554 kb on - strand, within Echvi_3254 at 3859.559 kb on + strand, within Echvi_3254 at 3859.560 kb on - strand, within Echvi_3254 at 3859.633 kb on + strand, within Echvi_3254 at 3859.650 kb on - strand, within Echvi_3254 at 3859.650 kb on - strand, within Echvi_3254 at 3859.667 kb on + strand, within Echvi_3254 at 3859.670 kb on + strand, within Echvi_3254 at 3859.670 kb on + strand, within Echvi_3254 at 3859.670 kb on + strand, within Echvi_3254 at 3859.670 kb on + strand, within Echvi_3254 at 3859.713 kb on - strand, within Echvi_3254 at 3859.722 kb on + strand, within Echvi_3254 at 3859.722 kb on + strand, within Echvi_3254 at 3859.723 kb on - strand, within Echvi_3254 at 3859.751 kb on - strand, within Echvi_3254 at 3859.755 kb on + strand, within Echvi_3254 at 3859.755 kb on + strand, within Echvi_3254 at 3859.755 kb on + strand, within Echvi_3254 at 3859.798 kb on + strand, within Echvi_3254 at 3859.799 kb on - strand, within Echvi_3254 at 3859.807 kb on - strand, within Echvi_3254 at 3859.834 kb on - strand, within Echvi_3254 at 3859.836 kb on + strand, within Echvi_3254 at 3859.836 kb on + strand, within Echvi_3254 at 3859.837 kb on - strand, within Echvi_3254 at 3859.837 kb on - strand, within Echvi_3254 at 3859.837 kb on - strand, within Echvi_3254 at 3859.876 kb on - strand, within Echvi_3254 at 3859.911 kb on + strand, within Echvi_3254 at 3859.912 kb on - strand, within Echvi_3254 at 3859.918 kb on - strand, within Echvi_3254 at 3859.942 kb on - strand, within Echvi_3254 at 3859.959 kb on + strand, within Echvi_3254 at 3859.968 kb on - strand, within Echvi_3254 at 3860.112 kb on + strand at 3860.115 kb on + strand at 3860.115 kb on + strand at 3860.115 kb on + strand at 3860.116 kb on - strand at 3860.116 kb on - strand at 3860.150 kb on - strand at 3860.188 kb on - strand at 3860.258 kb on + strand at 3860.259 kb on - strand at 3860.296 kb on + strand, within Echvi_3255 at 3860.296 kb on + strand, within Echvi_3255 at 3860.297 kb on - strand, within Echvi_3255 at 3860.297 kb on - strand, within Echvi_3255 at 3860.297 kb on - strand, within Echvi_3255 at 3860.297 kb on - strand, within Echvi_3255 at 3860.444 kb on + strand, within Echvi_3255 at 3860.444 kb on + strand, within Echvi_3255 at 3860.448 kb on + strand, within Echvi_3255 at 3860.448 kb on + strand, within Echvi_3255 at 3860.485 kb on + strand, within Echvi_3255 at 3860.564 kb on + strand, within Echvi_3255 at 3860.565 kb on - strand, within Echvi_3255 at 3860.602 kb on + strand, within Echvi_3255 at 3860.603 kb on - strand, within Echvi_3255 at 3860.603 kb on - strand, within Echvi_3255 at 3860.605 kb on - strand, within Echvi_3255 at 3860.609 kb on - strand, within Echvi_3255 at 3860.619 kb on + strand, within Echvi_3255 at 3860.620 kb on - strand, within Echvi_3255 at 3860.620 kb on - strand, within Echvi_3255 at 3860.626 kb on - strand, within Echvi_3255 at 3860.714 kb on - strand, within Echvi_3255 at 3860.734 kb on - strand, within Echvi_3255 at 3860.746 kb on - strand, within Echvi_3255 at 3860.746 kb on - strand, within Echvi_3255 at 3860.791 kb on - strand, within Echvi_3255 at 3860.791 kb on - strand, within Echvi_3255 at 3860.827 kb on + strand, within Echvi_3255 at 3860.828 kb on - strand, within Echvi_3255 at 3860.828 kb on - strand, within Echvi_3255 at 3860.839 kb on + strand, within Echvi_3255 at 3860.878 kb on - strand at 3860.905 kb on + strand at 3860.906 kb on - strand at 3860.912 kb on + strand at 3860.915 kb on + strand at 3860.916 kb on - strand at 3860.941 kb on - strand at 3861.000 kb on + strand at 3861.003 kb on + strand at 3861.004 kb on - strand at 3861.007 kb on + strand at 3861.008 kb on - strand at 3861.057 kb on + strand at 3861.079 kb on + strand at 3861.079 kb on + strand at 3861.079 kb on + strand at 3861.079 kb on + strand at 3861.079 kb on + strand at 3861.080 kb on - strand at 3861.080 kb on - strand at 3861.165 kb on + strand at 3861.166 kb on - strand at 3861.201 kb on + strand, within Echvi_3256 at 3861.202 kb on - strand, within Echvi_3256 at 3861.202 kb on - strand, within Echvi_3256 at 3861.209 kb on + strand, within Echvi_3256 at 3861.210 kb on - strand, within Echvi_3256 at 3861.210 kb on - strand, within Echvi_3256 at 3861.211 kb on + strand, within Echvi_3256 at 3861.212 kb on - strand, within Echvi_3256 at 3861.212 kb on - strand, within Echvi_3256 at 3861.253 kb on + strand, within Echvi_3256 at 3861.263 kb on + strand, within Echvi_3256 at 3861.263 kb on + strand, within Echvi_3256 at 3861.263 kb on + strand, within Echvi_3256 at 3861.297 kb on - strand, within Echvi_3256 at 3861.303 kb on + strand, within Echvi_3256 at 3861.326 kb on - strand, within Echvi_3256 at 3861.339 kb on + strand, within Echvi_3256 at 3861.339 kb on + strand, within Echvi_3256 at 3861.340 kb on - strand, within Echvi_3256 at 3861.340 kb on - strand, within Echvi_3256 at 3861.369 kb on - strand, within Echvi_3256 at 3861.389 kb on + strand, within Echvi_3256 at 3861.389 kb on + strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.399 kb on + strand, within Echvi_3256 at 3861.494 kb on - strand, within Echvi_3256 at 3861.494 kb on - strand, within Echvi_3256 at 3861.545 kb on - strand, within Echvi_3256 at 3861.545 kb on - strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.562 kb on + strand, within Echvi_3256 at 3861.562 kb on + strand, within Echvi_3256 at 3861.563 kb on - strand, within Echvi_3256 at 3861.569 kb on - strand, within Echvi_3256 at 3861.572 kb on - strand, within Echvi_3256 at 3861.654 kb on + strand, within Echvi_3256 at 3861.657 kb on + strand, within Echvi_3256 at 3861.657 kb on + strand, within Echvi_3256 at 3861.658 kb on - strand, within Echvi_3256 at 3861.664 kb on + strand, within Echvi_3256 at 3861.687 kb on + strand, within Echvi_3256 at 3861.690 kb on + strand, within Echvi_3256 at 3861.691 kb on - strand, within Echvi_3256 at 3861.691 kb on - strand, within Echvi_3256 at 3861.718 kb on - strand, within Echvi_3256 at 3861.759 kb on - strand, within Echvi_3256 at 3861.759 kb on - strand, within Echvi_3256 at 3861.773 kb on - strand, within Echvi_3256 at 3861.788 kb on + strand, within Echvi_3256 at 3861.789 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.819 kb on + strand, within Echvi_3256 at 3861.819 kb on + strand, within Echvi_3256 at 3861.820 kb on - strand, within Echvi_3256 at 3861.827 kb on + strand, within Echvi_3256 at 3861.827 kb on + strand, within Echvi_3256 at 3861.828 kb on - strand, within Echvi_3256 at 3861.835 kb on - strand, within Echvi_3256 at 3861.840 kb on + strand, within Echvi_3256 at 3861.840 kb on + strand, within Echvi_3256 at 3861.841 kb on - strand, within Echvi_3256 at 3861.841 kb on - strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM remove 3,859,225 + +0.0 3,859,259 - -2.9 3,859,277 + -0.2 3,859,277 + +0.3 3,859,278 - +0.4 3,859,278 - -1.0 3,859,278 - +0.3 3,859,278 - +0.8 3,859,298 + +0.1 3,859,318 + Echvi_3254 0.11 -1.3 3,859,380 + Echvi_3254 0.18 -1.2 3,859,381 - Echvi_3254 0.18 +0.3 3,859,381 - Echvi_3254 0.18 -2.6 3,859,406 + Echvi_3254 0.20 +0.0 3,859,406 + Echvi_3254 0.20 +0.2 3,859,406 + Echvi_3254 0.20 -0.7 3,859,406 + Echvi_3254 0.20 -2.1 3,859,407 - Echvi_3254 0.20 -0.0 3,859,407 - Echvi_3254 0.20 -1.5 3,859,419 - Echvi_3254 0.22 +0.8 3,859,419 - Echvi_3254 0.22 -0.7 3,859,421 + Echvi_3254 0.22 +0.6 3,859,422 - Echvi_3254 0.22 +0.5 3,859,424 + Echvi_3254 0.22 -2.4 3,859,424 + Echvi_3254 0.22 +0.2 3,859,425 - Echvi_3254 0.22 +0.3 3,859,513 - Echvi_3254 0.31 +0.6 3,859,514 + Echvi_3254 0.31 -0.5 3,859,535 + Echvi_3254 0.33 +2.8 3,859,554 - Echvi_3254 0.35 +0.7 3,859,559 + Echvi_3254 0.36 +0.6 3,859,560 - Echvi_3254 0.36 +1.4 3,859,633 + Echvi_3254 0.43 +0.9 3,859,650 - Echvi_3254 0.45 +0.2 3,859,650 - Echvi_3254 0.45 +0.2 3,859,667 + Echvi_3254 0.47 +0.1 3,859,670 + Echvi_3254 0.47 +0.5 3,859,670 + Echvi_3254 0.47 +0.4 3,859,670 + Echvi_3254 0.47 -0.2 3,859,670 + Echvi_3254 0.47 +0.8 3,859,713 - Echvi_3254 0.52 -1.0 3,859,722 + Echvi_3254 0.52 -2.2 3,859,722 + Echvi_3254 0.52 -0.2 3,859,723 - Echvi_3254 0.53 -0.9 3,859,751 - Echvi_3254 0.55 -1.3 3,859,755 + Echvi_3254 0.56 -0.1 3,859,755 + Echvi_3254 0.56 -0.0 3,859,755 + Echvi_3254 0.56 +1.0 3,859,798 + Echvi_3254 0.60 -2.4 3,859,799 - Echvi_3254 0.60 +1.1 3,859,807 - Echvi_3254 0.61 -1.3 3,859,834 - Echvi_3254 0.64 +0.4 3,859,836 + Echvi_3254 0.64 -0.7 3,859,836 + Echvi_3254 0.64 -0.7 3,859,837 - Echvi_3254 0.64 +0.5 3,859,837 - Echvi_3254 0.64 +0.6 3,859,837 - Echvi_3254 0.64 -0.1 3,859,876 - Echvi_3254 0.68 -0.1 3,859,911 + Echvi_3254 0.72 -0.4 3,859,912 - Echvi_3254 0.72 +1.0 3,859,918 - Echvi_3254 0.72 -0.0 3,859,942 - Echvi_3254 0.75 +2.0 3,859,959 + Echvi_3254 0.77 +0.3 3,859,968 - Echvi_3254 0.78 +1.1 3,860,112 + +0.2 3,860,115 + -0.2 3,860,115 + -1.2 3,860,115 + +1.9 3,860,116 - +1.8 3,860,116 - -0.7 3,860,150 - -1.4 3,860,188 - +1.1 3,860,258 + +0.4 3,860,259 - -0.0 3,860,296 + Echvi_3255 0.13 -0.4 3,860,296 + Echvi_3255 0.13 +1.0 3,860,297 - Echvi_3255 0.14 -2.4 3,860,297 - Echvi_3255 0.14 +0.2 3,860,297 - Echvi_3255 0.14 +0.5 3,860,297 - Echvi_3255 0.14 +0.4 3,860,444 + Echvi_3255 0.34 +1.0 3,860,444 + Echvi_3255 0.34 +0.0 3,860,448 + Echvi_3255 0.34 +0.3 3,860,448 + Echvi_3255 0.34 +0.5 3,860,485 + Echvi_3255 0.39 +0.4 3,860,564 + Echvi_3255 0.50 -1.0 3,860,565 - Echvi_3255 0.50 +1.1 3,860,602 + Echvi_3255 0.55 +1.4 3,860,603 - Echvi_3255 0.56 +4.0 3,860,603 - Echvi_3255 0.56 -1.2 3,860,605 - Echvi_3255 0.56 +1.0 3,860,609 - Echvi_3255 0.56 -0.9 3,860,619 + Echvi_3255 0.58 +0.7 3,860,620 - Echvi_3255 0.58 +1.8 3,860,620 - Echvi_3255 0.58 -0.3 3,860,626 - Echvi_3255 0.59 +1.1 3,860,714 - Echvi_3255 0.71 -0.8 3,860,734 - Echvi_3255 0.74 +0.1 3,860,746 - Echvi_3255 0.75 +0.0 3,860,746 - Echvi_3255 0.75 -0.9 3,860,791 - Echvi_3255 0.81 +0.5 3,860,791 - Echvi_3255 0.81 -0.3 3,860,827 + Echvi_3255 0.86 +0.9 3,860,828 - Echvi_3255 0.86 -0.5 3,860,828 - Echvi_3255 0.86 +2.3 3,860,839 + Echvi_3255 0.88 +0.8 3,860,878 - -0.1 3,860,905 + -1.4 3,860,906 - -0.1 3,860,912 + -1.3 3,860,915 + -1.7 3,860,916 - +0.3 3,860,941 - +1.1 3,861,000 + -0.1 3,861,003 + +0.2 3,861,004 - +0.4 3,861,007 + +0.2 3,861,008 - -0.1 3,861,057 + +0.1 3,861,079 + +0.6 3,861,079 + -1.1 3,861,079 + +0.2 3,861,079 + -0.1 3,861,079 + +0.1 3,861,080 - -0.3 3,861,080 - +0.7 3,861,165 + -0.5 3,861,166 - +0.4 3,861,201 + Echvi_3256 0.11 -1.0 3,861,202 - Echvi_3256 0.11 -0.5 3,861,202 - Echvi_3256 0.11 -1.0 3,861,209 + Echvi_3256 0.12 -0.1 3,861,210 - Echvi_3256 0.12 -1.3 3,861,210 - Echvi_3256 0.12 +0.5 3,861,211 + Echvi_3256 0.12 -0.2 3,861,212 - Echvi_3256 0.12 +0.3 3,861,212 - Echvi_3256 0.12 -0.2 3,861,253 + Echvi_3256 0.16 +0.7 3,861,263 + Echvi_3256 0.17 +0.1 3,861,263 + Echvi_3256 0.17 -0.7 3,861,263 + Echvi_3256 0.17 +0.0 3,861,297 - Echvi_3256 0.20 -0.8 3,861,303 + Echvi_3256 0.21 -0.8 3,861,326 - Echvi_3256 0.23 +0.9 3,861,339 + Echvi_3256 0.24 -0.2 3,861,339 + Echvi_3256 0.24 -0.0 3,861,340 - Echvi_3256 0.24 -2.0 3,861,340 - Echvi_3256 0.24 -0.4 3,861,369 - Echvi_3256 0.27 -0.1 3,861,389 + Echvi_3256 0.29 +0.7 3,861,389 + Echvi_3256 0.29 -1.1 3,861,390 - Echvi_3256 0.29 -1.0 3,861,390 - Echvi_3256 0.29 +0.5 3,861,390 - Echvi_3256 0.29 +0.4 3,861,390 - Echvi_3256 0.29 -0.3 3,861,399 + Echvi_3256 0.30 +1.7 3,861,494 - Echvi_3256 0.39 +0.3 3,861,494 - Echvi_3256 0.39 +0.7 3,861,545 - Echvi_3256 0.44 +1.1 3,861,545 - Echvi_3256 0.44 +0.8 3,861,549 + Echvi_3256 0.44 -0.2 3,861,549 + Echvi_3256 0.44 +0.2 3,861,549 + Echvi_3256 0.44 -1.2 3,861,562 + Echvi_3256 0.46 +0.6 3,861,562 + Echvi_3256 0.46 -0.5 3,861,563 - Echvi_3256 0.46 -0.8 3,861,569 - Echvi_3256 0.46 -0.4 3,861,572 - Echvi_3256 0.47 -0.4 3,861,654 + Echvi_3256 0.55 -1.2 3,861,657 + Echvi_3256 0.55 +0.7 3,861,657 + Echvi_3256 0.55 +1.4 3,861,658 - Echvi_3256 0.55 +0.7 3,861,664 + Echvi_3256 0.55 +0.1 3,861,687 + Echvi_3256 0.58 -0.9 3,861,690 + Echvi_3256 0.58 -0.6 3,861,691 - Echvi_3256 0.58 -1.7 3,861,691 - Echvi_3256 0.58 -0.3 3,861,718 - Echvi_3256 0.61 +0.4 3,861,759 - Echvi_3256 0.65 +0.3 3,861,759 - Echvi_3256 0.65 -0.2 3,861,773 - Echvi_3256 0.66 +0.8 3,861,788 + Echvi_3256 0.67 +0.7 3,861,789 - Echvi_3256 0.67 +0.7 3,861,805 - Echvi_3256 0.69 +0.4 3,861,805 - Echvi_3256 0.69 +0.0 3,861,805 - Echvi_3256 0.69 -2.6 3,861,819 + Echvi_3256 0.70 -1.7 3,861,819 + Echvi_3256 0.70 -0.2 3,861,820 - Echvi_3256 0.70 -0.6 3,861,827 + Echvi_3256 0.71 -0.1 3,861,827 + Echvi_3256 0.71 -1.0 3,861,828 - Echvi_3256 0.71 +1.3 3,861,835 - Echvi_3256 0.72 -0.3 3,861,840 + Echvi_3256 0.72 -0.5 3,861,840 + Echvi_3256 0.72 +0.7 3,861,841 - Echvi_3256 0.72 -1.2 3,861,841 - Echvi_3256 0.72 +0.0 3,861,919 + Echvi_3256 0.80 +1.8 3,861,919 + Echvi_3256 0.80 -0.3 3,861,919 + Echvi_3256 0.80 +0.5
Or see this region's nucleotide sequence