Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3255

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3254 and Echvi_3255 are separated by 10 nucleotidesEchvi_3255 and Echvi_3256 are separated by 158 nucleotides Echvi_3254: Echvi_3254 - hypothetical protein, at 3,859,207 to 3,860,187 _3254 Echvi_3255: Echvi_3255 - Predicted periplasmic protein, at 3,860,198 to 3,860,926 _3255 Echvi_3256: Echvi_3256 - AraC-type DNA-binding domain-containing proteins, at 3,861,085 to 3,862,128 _3256 Position (kb) 3860 3861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3859.225 kb on + strandat 3859.259 kb on - strandat 3859.277 kb on + strandat 3859.277 kb on + strandat 3859.278 kb on - strandat 3859.278 kb on - strandat 3859.278 kb on - strandat 3859.278 kb on - strandat 3859.298 kb on + strandat 3859.318 kb on + strand, within Echvi_3254at 3859.380 kb on + strand, within Echvi_3254at 3859.381 kb on - strand, within Echvi_3254at 3859.381 kb on - strand, within Echvi_3254at 3859.406 kb on + strand, within Echvi_3254at 3859.406 kb on + strand, within Echvi_3254at 3859.406 kb on + strand, within Echvi_3254at 3859.406 kb on + strand, within Echvi_3254at 3859.407 kb on - strand, within Echvi_3254at 3859.407 kb on - strand, within Echvi_3254at 3859.419 kb on - strand, within Echvi_3254at 3859.419 kb on - strand, within Echvi_3254at 3859.421 kb on + strand, within Echvi_3254at 3859.422 kb on - strand, within Echvi_3254at 3859.424 kb on + strand, within Echvi_3254at 3859.424 kb on + strand, within Echvi_3254at 3859.425 kb on - strand, within Echvi_3254at 3859.513 kb on - strand, within Echvi_3254at 3859.514 kb on + strand, within Echvi_3254at 3859.535 kb on + strand, within Echvi_3254at 3859.554 kb on - strand, within Echvi_3254at 3859.559 kb on + strand, within Echvi_3254at 3859.560 kb on - strand, within Echvi_3254at 3859.633 kb on + strand, within Echvi_3254at 3859.650 kb on - strand, within Echvi_3254at 3859.650 kb on - strand, within Echvi_3254at 3859.667 kb on + strand, within Echvi_3254at 3859.670 kb on + strand, within Echvi_3254at 3859.670 kb on + strand, within Echvi_3254at 3859.670 kb on + strand, within Echvi_3254at 3859.670 kb on + strand, within Echvi_3254at 3859.713 kb on - strand, within Echvi_3254at 3859.722 kb on + strand, within Echvi_3254at 3859.722 kb on + strand, within Echvi_3254at 3859.723 kb on - strand, within Echvi_3254at 3859.751 kb on - strand, within Echvi_3254at 3859.755 kb on + strand, within Echvi_3254at 3859.755 kb on + strand, within Echvi_3254at 3859.755 kb on + strand, within Echvi_3254at 3859.798 kb on + strand, within Echvi_3254at 3859.799 kb on - strand, within Echvi_3254at 3859.807 kb on - strand, within Echvi_3254at 3859.834 kb on - strand, within Echvi_3254at 3859.836 kb on + strand, within Echvi_3254at 3859.836 kb on + strand, within Echvi_3254at 3859.837 kb on - strand, within Echvi_3254at 3859.837 kb on - strand, within Echvi_3254at 3859.837 kb on - strand, within Echvi_3254at 3859.876 kb on - strand, within Echvi_3254at 3859.911 kb on + strand, within Echvi_3254at 3859.912 kb on - strand, within Echvi_3254at 3859.918 kb on - strand, within Echvi_3254at 3859.942 kb on - strand, within Echvi_3254at 3859.959 kb on + strand, within Echvi_3254at 3859.968 kb on - strand, within Echvi_3254at 3860.112 kb on + strandat 3860.115 kb on + strandat 3860.115 kb on + strandat 3860.115 kb on + strandat 3860.116 kb on - strandat 3860.116 kb on - strandat 3860.150 kb on - strandat 3860.188 kb on - strandat 3860.258 kb on + strandat 3860.259 kb on - strandat 3860.296 kb on + strand, within Echvi_3255at 3860.296 kb on + strand, within Echvi_3255at 3860.297 kb on - strand, within Echvi_3255at 3860.297 kb on - strand, within Echvi_3255at 3860.297 kb on - strand, within Echvi_3255at 3860.297 kb on - strand, within Echvi_3255at 3860.444 kb on + strand, within Echvi_3255at 3860.444 kb on + strand, within Echvi_3255at 3860.448 kb on + strand, within Echvi_3255at 3860.448 kb on + strand, within Echvi_3255at 3860.485 kb on + strand, within Echvi_3255at 3860.564 kb on + strand, within Echvi_3255at 3860.565 kb on - strand, within Echvi_3255at 3860.602 kb on + strand, within Echvi_3255at 3860.603 kb on - strand, within Echvi_3255at 3860.603 kb on - strand, within Echvi_3255at 3860.605 kb on - strand, within Echvi_3255at 3860.609 kb on - strand, within Echvi_3255at 3860.619 kb on + strand, within Echvi_3255at 3860.620 kb on - strand, within Echvi_3255at 3860.620 kb on - strand, within Echvi_3255at 3860.626 kb on - strand, within Echvi_3255at 3860.714 kb on - strand, within Echvi_3255at 3860.734 kb on - strand, within Echvi_3255at 3860.746 kb on - strand, within Echvi_3255at 3860.746 kb on - strand, within Echvi_3255at 3860.791 kb on - strand, within Echvi_3255at 3860.791 kb on - strand, within Echvi_3255at 3860.827 kb on + strand, within Echvi_3255at 3860.828 kb on - strand, within Echvi_3255at 3860.828 kb on - strand, within Echvi_3255at 3860.839 kb on + strand, within Echvi_3255at 3860.878 kb on - strandat 3860.905 kb on + strandat 3860.906 kb on - strandat 3860.912 kb on + strandat 3860.915 kb on + strandat 3860.916 kb on - strandat 3860.941 kb on - strandat 3861.000 kb on + strandat 3861.003 kb on + strandat 3861.004 kb on - strandat 3861.007 kb on + strandat 3861.008 kb on - strandat 3861.057 kb on + strandat 3861.079 kb on + strandat 3861.079 kb on + strandat 3861.079 kb on + strandat 3861.079 kb on + strandat 3861.079 kb on + strandat 3861.080 kb on - strandat 3861.080 kb on - strandat 3861.165 kb on + strandat 3861.166 kb on - strandat 3861.201 kb on + strand, within Echvi_3256at 3861.202 kb on - strand, within Echvi_3256at 3861.202 kb on - strand, within Echvi_3256at 3861.209 kb on + strand, within Echvi_3256at 3861.210 kb on - strand, within Echvi_3256at 3861.210 kb on - strand, within Echvi_3256at 3861.211 kb on + strand, within Echvi_3256at 3861.212 kb on - strand, within Echvi_3256at 3861.212 kb on - strand, within Echvi_3256at 3861.253 kb on + strand, within Echvi_3256at 3861.263 kb on + strand, within Echvi_3256at 3861.263 kb on + strand, within Echvi_3256at 3861.263 kb on + strand, within Echvi_3256at 3861.297 kb on - strand, within Echvi_3256at 3861.303 kb on + strand, within Echvi_3256at 3861.326 kb on - strand, within Echvi_3256at 3861.339 kb on + strand, within Echvi_3256at 3861.339 kb on + strand, within Echvi_3256at 3861.340 kb on - strand, within Echvi_3256at 3861.340 kb on - strand, within Echvi_3256at 3861.369 kb on - strand, within Echvi_3256at 3861.389 kb on + strand, within Echvi_3256at 3861.389 kb on + strand, within Echvi_3256at 3861.390 kb on - strand, within Echvi_3256at 3861.390 kb on - strand, within Echvi_3256at 3861.390 kb on - strand, within Echvi_3256at 3861.390 kb on - strand, within Echvi_3256at 3861.399 kb on + strand, within Echvi_3256at 3861.494 kb on - strand, within Echvi_3256at 3861.494 kb on - strand, within Echvi_3256at 3861.545 kb on - strand, within Echvi_3256at 3861.545 kb on - strand, within Echvi_3256at 3861.549 kb on + strand, within Echvi_3256at 3861.549 kb on + strand, within Echvi_3256at 3861.549 kb on + strand, within Echvi_3256at 3861.562 kb on + strand, within Echvi_3256at 3861.562 kb on + strand, within Echvi_3256at 3861.563 kb on - strand, within Echvi_3256at 3861.569 kb on - strand, within Echvi_3256at 3861.572 kb on - strand, within Echvi_3256at 3861.654 kb on + strand, within Echvi_3256at 3861.657 kb on + strand, within Echvi_3256at 3861.657 kb on + strand, within Echvi_3256at 3861.658 kb on - strand, within Echvi_3256at 3861.664 kb on + strand, within Echvi_3256at 3861.687 kb on + strand, within Echvi_3256at 3861.690 kb on + strand, within Echvi_3256at 3861.691 kb on - strand, within Echvi_3256at 3861.691 kb on - strand, within Echvi_3256at 3861.718 kb on - strand, within Echvi_3256at 3861.759 kb on - strand, within Echvi_3256at 3861.759 kb on - strand, within Echvi_3256at 3861.773 kb on - strand, within Echvi_3256at 3861.788 kb on + strand, within Echvi_3256at 3861.789 kb on - strand, within Echvi_3256at 3861.805 kb on - strand, within Echvi_3256at 3861.805 kb on - strand, within Echvi_3256at 3861.805 kb on - strand, within Echvi_3256at 3861.819 kb on + strand, within Echvi_3256at 3861.819 kb on + strand, within Echvi_3256at 3861.820 kb on - strand, within Echvi_3256at 3861.827 kb on + strand, within Echvi_3256at 3861.827 kb on + strand, within Echvi_3256at 3861.828 kb on - strand, within Echvi_3256at 3861.835 kb on - strand, within Echvi_3256at 3861.840 kb on + strand, within Echvi_3256at 3861.840 kb on + strand, within Echvi_3256at 3861.841 kb on - strand, within Echvi_3256at 3861.841 kb on - strand, within Echvi_3256at 3861.919 kb on + strand, within Echvi_3256at 3861.919 kb on + strand, within Echvi_3256at 3861.919 kb on + strand, within Echvi_3256

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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3,859,225 + +0.0
3,859,259 - -2.9
3,859,277 + -0.2
3,859,277 + +0.3
3,859,278 - +0.4
3,859,278 - -1.0
3,859,278 - +0.3
3,859,278 - +0.8
3,859,298 + +0.1
3,859,318 + Echvi_3254 0.11 -1.3
3,859,380 + Echvi_3254 0.18 -1.2
3,859,381 - Echvi_3254 0.18 +0.3
3,859,381 - Echvi_3254 0.18 -2.6
3,859,406 + Echvi_3254 0.20 +0.0
3,859,406 + Echvi_3254 0.20 +0.2
3,859,406 + Echvi_3254 0.20 -0.7
3,859,406 + Echvi_3254 0.20 -2.1
3,859,407 - Echvi_3254 0.20 -0.0
3,859,407 - Echvi_3254 0.20 -1.5
3,859,419 - Echvi_3254 0.22 +0.8
3,859,419 - Echvi_3254 0.22 -0.7
3,859,421 + Echvi_3254 0.22 +0.6
3,859,422 - Echvi_3254 0.22 +0.5
3,859,424 + Echvi_3254 0.22 -2.4
3,859,424 + Echvi_3254 0.22 +0.2
3,859,425 - Echvi_3254 0.22 +0.3
3,859,513 - Echvi_3254 0.31 +0.6
3,859,514 + Echvi_3254 0.31 -0.5
3,859,535 + Echvi_3254 0.33 +2.8
3,859,554 - Echvi_3254 0.35 +0.7
3,859,559 + Echvi_3254 0.36 +0.6
3,859,560 - Echvi_3254 0.36 +1.4
3,859,633 + Echvi_3254 0.43 +0.9
3,859,650 - Echvi_3254 0.45 +0.2
3,859,650 - Echvi_3254 0.45 +0.2
3,859,667 + Echvi_3254 0.47 +0.1
3,859,670 + Echvi_3254 0.47 +0.5
3,859,670 + Echvi_3254 0.47 +0.4
3,859,670 + Echvi_3254 0.47 -0.2
3,859,670 + Echvi_3254 0.47 +0.8
3,859,713 - Echvi_3254 0.52 -1.0
3,859,722 + Echvi_3254 0.52 -2.2
3,859,722 + Echvi_3254 0.52 -0.2
3,859,723 - Echvi_3254 0.53 -0.9
3,859,751 - Echvi_3254 0.55 -1.3
3,859,755 + Echvi_3254 0.56 -0.1
3,859,755 + Echvi_3254 0.56 -0.0
3,859,755 + Echvi_3254 0.56 +1.0
3,859,798 + Echvi_3254 0.60 -2.4
3,859,799 - Echvi_3254 0.60 +1.1
3,859,807 - Echvi_3254 0.61 -1.3
3,859,834 - Echvi_3254 0.64 +0.4
3,859,836 + Echvi_3254 0.64 -0.7
3,859,836 + Echvi_3254 0.64 -0.7
3,859,837 - Echvi_3254 0.64 +0.5
3,859,837 - Echvi_3254 0.64 +0.6
3,859,837 - Echvi_3254 0.64 -0.1
3,859,876 - Echvi_3254 0.68 -0.1
3,859,911 + Echvi_3254 0.72 -0.4
3,859,912 - Echvi_3254 0.72 +1.0
3,859,918 - Echvi_3254 0.72 -0.0
3,859,942 - Echvi_3254 0.75 +2.0
3,859,959 + Echvi_3254 0.77 +0.3
3,859,968 - Echvi_3254 0.78 +1.1
3,860,112 + +0.2
3,860,115 + -0.2
3,860,115 + -1.2
3,860,115 + +1.9
3,860,116 - +1.8
3,860,116 - -0.7
3,860,150 - -1.4
3,860,188 - +1.1
3,860,258 + +0.4
3,860,259 - -0.0
3,860,296 + Echvi_3255 0.13 -0.4
3,860,296 + Echvi_3255 0.13 +1.0
3,860,297 - Echvi_3255 0.14 -2.4
3,860,297 - Echvi_3255 0.14 +0.2
3,860,297 - Echvi_3255 0.14 +0.5
3,860,297 - Echvi_3255 0.14 +0.4
3,860,444 + Echvi_3255 0.34 +1.0
3,860,444 + Echvi_3255 0.34 +0.0
3,860,448 + Echvi_3255 0.34 +0.3
3,860,448 + Echvi_3255 0.34 +0.5
3,860,485 + Echvi_3255 0.39 +0.4
3,860,564 + Echvi_3255 0.50 -1.0
3,860,565 - Echvi_3255 0.50 +1.1
3,860,602 + Echvi_3255 0.55 +1.4
3,860,603 - Echvi_3255 0.56 +4.0
3,860,603 - Echvi_3255 0.56 -1.2
3,860,605 - Echvi_3255 0.56 +1.0
3,860,609 - Echvi_3255 0.56 -0.9
3,860,619 + Echvi_3255 0.58 +0.7
3,860,620 - Echvi_3255 0.58 +1.8
3,860,620 - Echvi_3255 0.58 -0.3
3,860,626 - Echvi_3255 0.59 +1.1
3,860,714 - Echvi_3255 0.71 -0.8
3,860,734 - Echvi_3255 0.74 +0.1
3,860,746 - Echvi_3255 0.75 +0.0
3,860,746 - Echvi_3255 0.75 -0.9
3,860,791 - Echvi_3255 0.81 +0.5
3,860,791 - Echvi_3255 0.81 -0.3
3,860,827 + Echvi_3255 0.86 +0.9
3,860,828 - Echvi_3255 0.86 -0.5
3,860,828 - Echvi_3255 0.86 +2.3
3,860,839 + Echvi_3255 0.88 +0.8
3,860,878 - -0.1
3,860,905 + -1.4
3,860,906 - -0.1
3,860,912 + -1.3
3,860,915 + -1.7
3,860,916 - +0.3
3,860,941 - +1.1
3,861,000 + -0.1
3,861,003 + +0.2
3,861,004 - +0.4
3,861,007 + +0.2
3,861,008 - -0.1
3,861,057 + +0.1
3,861,079 + +0.6
3,861,079 + -1.1
3,861,079 + +0.2
3,861,079 + -0.1
3,861,079 + +0.1
3,861,080 - -0.3
3,861,080 - +0.7
3,861,165 + -0.5
3,861,166 - +0.4
3,861,201 + Echvi_3256 0.11 -1.0
3,861,202 - Echvi_3256 0.11 -0.5
3,861,202 - Echvi_3256 0.11 -1.0
3,861,209 + Echvi_3256 0.12 -0.1
3,861,210 - Echvi_3256 0.12 -1.3
3,861,210 - Echvi_3256 0.12 +0.5
3,861,211 + Echvi_3256 0.12 -0.2
3,861,212 - Echvi_3256 0.12 +0.3
3,861,212 - Echvi_3256 0.12 -0.2
3,861,253 + Echvi_3256 0.16 +0.7
3,861,263 + Echvi_3256 0.17 +0.1
3,861,263 + Echvi_3256 0.17 -0.7
3,861,263 + Echvi_3256 0.17 +0.0
3,861,297 - Echvi_3256 0.20 -0.8
3,861,303 + Echvi_3256 0.21 -0.8
3,861,326 - Echvi_3256 0.23 +0.9
3,861,339 + Echvi_3256 0.24 -0.2
3,861,339 + Echvi_3256 0.24 -0.0
3,861,340 - Echvi_3256 0.24 -2.0
3,861,340 - Echvi_3256 0.24 -0.4
3,861,369 - Echvi_3256 0.27 -0.1
3,861,389 + Echvi_3256 0.29 +0.7
3,861,389 + Echvi_3256 0.29 -1.1
3,861,390 - Echvi_3256 0.29 -1.0
3,861,390 - Echvi_3256 0.29 +0.5
3,861,390 - Echvi_3256 0.29 +0.4
3,861,390 - Echvi_3256 0.29 -0.3
3,861,399 + Echvi_3256 0.30 +1.7
3,861,494 - Echvi_3256 0.39 +0.3
3,861,494 - Echvi_3256 0.39 +0.7
3,861,545 - Echvi_3256 0.44 +1.1
3,861,545 - Echvi_3256 0.44 +0.8
3,861,549 + Echvi_3256 0.44 -0.2
3,861,549 + Echvi_3256 0.44 +0.2
3,861,549 + Echvi_3256 0.44 -1.2
3,861,562 + Echvi_3256 0.46 +0.6
3,861,562 + Echvi_3256 0.46 -0.5
3,861,563 - Echvi_3256 0.46 -0.8
3,861,569 - Echvi_3256 0.46 -0.4
3,861,572 - Echvi_3256 0.47 -0.4
3,861,654 + Echvi_3256 0.55 -1.2
3,861,657 + Echvi_3256 0.55 +0.7
3,861,657 + Echvi_3256 0.55 +1.4
3,861,658 - Echvi_3256 0.55 +0.7
3,861,664 + Echvi_3256 0.55 +0.1
3,861,687 + Echvi_3256 0.58 -0.9
3,861,690 + Echvi_3256 0.58 -0.6
3,861,691 - Echvi_3256 0.58 -1.7
3,861,691 - Echvi_3256 0.58 -0.3
3,861,718 - Echvi_3256 0.61 +0.4
3,861,759 - Echvi_3256 0.65 +0.3
3,861,759 - Echvi_3256 0.65 -0.2
3,861,773 - Echvi_3256 0.66 +0.8
3,861,788 + Echvi_3256 0.67 +0.7
3,861,789 - Echvi_3256 0.67 +0.7
3,861,805 - Echvi_3256 0.69 +0.4
3,861,805 - Echvi_3256 0.69 +0.0
3,861,805 - Echvi_3256 0.69 -2.6
3,861,819 + Echvi_3256 0.70 -1.7
3,861,819 + Echvi_3256 0.70 -0.2
3,861,820 - Echvi_3256 0.70 -0.6
3,861,827 + Echvi_3256 0.71 -0.1
3,861,827 + Echvi_3256 0.71 -1.0
3,861,828 - Echvi_3256 0.71 +1.3
3,861,835 - Echvi_3256 0.72 -0.3
3,861,840 + Echvi_3256 0.72 -0.5
3,861,840 + Echvi_3256 0.72 +0.7
3,861,841 - Echvi_3256 0.72 -1.2
3,861,841 - Echvi_3256 0.72 +0.0
3,861,919 + Echvi_3256 0.80 +1.8
3,861,919 + Echvi_3256 0.80 -0.3
3,861,919 + Echvi_3256 0.80 +0.5

Or see this region's nucleotide sequence