Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3204

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3203 and Echvi_3204 are separated by 353 nucleotidesEchvi_3204 and Echvi_3205 overlap by 1 nucleotidesEchvi_3205 and Echvi_3206 overlap by 4 nucleotides Echvi_3202: Echvi_3202 - copper-(or silver)-translocating P-type ATPase, at 3,798,772 to 3,802,233 _3202 Echvi_3203: Echvi_3203 - Transposase DDE domain., at 3,800,576 to 3,801,898 _3203 Echvi_3204: Echvi_3204 - Protein of unknown function (DUF2911)., at 3,802,252 to 3,802,833 _3204 Echvi_3205: Echvi_3205 - hypothetical protein, at 3,802,833 to 3,803,546 _3205 Echvi_3206: Echvi_3206 - Amino acid transporters, at 3,803,543 to 3,804,856 _3206 Position (kb) 3802 3803Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3801.261 kb on - strandat 3801.284 kb on + strandat 3801.285 kb on - strandat 3801.285 kb on - strandat 3801.292 kb on - strandat 3801.292 kb on - strandat 3801.297 kb on + strandat 3801.306 kb on - strandat 3801.306 kb on - strandat 3801.306 kb on - strandat 3801.417 kb on - strandat 3801.506 kb on + strandat 3801.506 kb on + strandat 3801.507 kb on - strandat 3801.507 kb on - strandat 3801.507 kb on - strandat 3801.507 kb on - strandat 3801.518 kb on - strandat 3801.551 kb on + strandat 3801.551 kb on + strandat 3801.552 kb on - strandat 3801.552 kb on - strandat 3801.552 kb on - strandat 3801.597 kb on - strandat 3801.597 kb on - strandat 3801.640 kb on + strandat 3801.664 kb on + strandat 3801.664 kb on + strandat 3801.665 kb on - strandat 3801.674 kb on + strandat 3801.691 kb on - strandat 3801.719 kb on - strandat 3801.719 kb on - strandat 3801.719 kb on - strandat 3801.750 kb on - strandat 3801.858 kb on + strandat 3801.858 kb on + strandat 3801.880 kb on + strandat 3801.884 kb on + strandat 3801.885 kb on - strandat 3801.889 kb on + strandat 3801.890 kb on - strandat 3801.890 kb on - strandat 3801.983 kb on + strandat 3801.983 kb on + strandat 3801.984 kb on - strandat 3801.984 kb on - strandat 3802.019 kb on - strandat 3802.033 kb on - strandat 3802.039 kb on + strandat 3802.197 kb on + strandat 3802.222 kb on - strandat 3802.253 kb on + strandat 3802.283 kb on - strandat 3802.333 kb on + strand, within Echvi_3204at 3802.333 kb on + strand, within Echvi_3204at 3802.333 kb on + strand, within Echvi_3204at 3802.334 kb on - strand, within Echvi_3204at 3802.338 kb on + strand, within Echvi_3204at 3802.339 kb on - strand, within Echvi_3204at 3802.340 kb on + strand, within Echvi_3204at 3802.341 kb on - strand, within Echvi_3204at 3802.341 kb on - strand, within Echvi_3204at 3802.341 kb on - strand, within Echvi_3204at 3802.341 kb on - strand, within Echvi_3204at 3802.341 kb on - strand, within Echvi_3204at 3802.416 kb on - strand, within Echvi_3204at 3802.416 kb on - strand, within Echvi_3204at 3802.486 kb on - strand, within Echvi_3204at 3802.486 kb on - strand, within Echvi_3204at 3802.496 kb on + strand, within Echvi_3204at 3802.497 kb on - strand, within Echvi_3204at 3802.497 kb on - strand, within Echvi_3204at 3802.550 kb on - strand, within Echvi_3204at 3802.643 kb on + strand, within Echvi_3204at 3802.653 kb on + strand, within Echvi_3204at 3802.813 kb on + strandat 3802.898 kb on + strandat 3802.908 kb on + strand, within Echvi_3205at 3803.064 kb on + strand, within Echvi_3205at 3803.065 kb on - strand, within Echvi_3205at 3803.065 kb on - strand, within Echvi_3205at 3803.065 kb on - strand, within Echvi_3205at 3803.065 kb on - strand, within Echvi_3205at 3803.267 kb on - strand, within Echvi_3205at 3803.267 kb on - strand, within Echvi_3205at 3803.267 kb on - strand, within Echvi_3205at 3803.276 kb on + strand, within Echvi_3205at 3803.312 kb on - strand, within Echvi_3205at 3803.450 kb on - strand, within Echvi_3205at 3803.524 kb on + strandat 3803.524 kb on + strandat 3803.525 kb on - strandat 3803.525 kb on - strandat 3803.527 kb on + strandat 3803.555 kb on - strandat 3803.573 kb on + strandat 3803.574 kb on - strandat 3803.603 kb on + strandat 3803.626 kb on + strandat 3803.626 kb on + strandat 3803.627 kb on - strandat 3803.675 kb on + strand, within Echvi_3206at 3803.706 kb on - strand, within Echvi_3206at 3803.706 kb on - strand, within Echvi_3206at 3803.706 kb on - strand, within Echvi_3206at 3803.742 kb on + strand, within Echvi_3206at 3803.742 kb on + strand, within Echvi_3206at 3803.743 kb on - strand, within Echvi_3206at 3803.746 kb on + strand, within Echvi_3206at 3803.747 kb on - strand, within Echvi_3206at 3803.747 kb on - strand, within Echvi_3206at 3803.748 kb on + strand, within Echvi_3206at 3803.750 kb on + strand, within Echvi_3206at 3803.751 kb on - strand, within Echvi_3206at 3803.751 kb on - strand, within Echvi_3206at 3803.764 kb on + strand, within Echvi_3206at 3803.782 kb on + strand, within Echvi_3206at 3803.785 kb on - strand, within Echvi_3206at 3803.830 kb on + strand, within Echvi_3206

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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3,801,261 - -1.4
3,801,284 + -0.6
3,801,285 - +1.6
3,801,285 - +1.3
3,801,292 - -0.6
3,801,292 - -1.9
3,801,297 + +2.3
3,801,306 - -2.6
3,801,306 - -3.1
3,801,306 - -1.5
3,801,417 - +1.1
3,801,506 + -1.1
3,801,506 + +0.5
3,801,507 - -1.1
3,801,507 - -0.9
3,801,507 - +0.3
3,801,507 - -0.3
3,801,518 - -1.4
3,801,551 + +1.4
3,801,551 + -2.5
3,801,552 - -0.2
3,801,552 - -0.7
3,801,552 - +0.3
3,801,597 - +0.8
3,801,597 - -1.6
3,801,640 + +0.1
3,801,664 + +1.2
3,801,664 + -0.3
3,801,665 - -0.5
3,801,674 + -0.4
3,801,691 - -0.8
3,801,719 - +0.2
3,801,719 - +0.4
3,801,719 - +0.5
3,801,750 - -0.5
3,801,858 + +0.3
3,801,858 + -0.6
3,801,880 + +0.9
3,801,884 + -0.0
3,801,885 - +0.3
3,801,889 + +0.2
3,801,890 - -0.4
3,801,890 - -1.3
3,801,983 + -2.0
3,801,983 + +1.0
3,801,984 - -0.3
3,801,984 - +1.3
3,802,019 - -0.5
3,802,033 - -0.0
3,802,039 + +0.4
3,802,197 + -1.1
3,802,222 - +0.3
3,802,253 + +0.2
3,802,283 - +0.9
3,802,333 + Echvi_3204 0.14 +1.5
3,802,333 + Echvi_3204 0.14 -0.5
3,802,333 + Echvi_3204 0.14 +2.0
3,802,334 - Echvi_3204 0.14 -0.2
3,802,338 + Echvi_3204 0.15 -1.7
3,802,339 - Echvi_3204 0.15 -2.2
3,802,340 + Echvi_3204 0.15 +0.0
3,802,341 - Echvi_3204 0.15 -0.3
3,802,341 - Echvi_3204 0.15 +0.1
3,802,341 - Echvi_3204 0.15 +2.1
3,802,341 - Echvi_3204 0.15 -3.6
3,802,341 - Echvi_3204 0.15 +2.1
3,802,416 - Echvi_3204 0.28 -0.7
3,802,416 - Echvi_3204 0.28 -0.7
3,802,486 - Echvi_3204 0.40 +0.6
3,802,486 - Echvi_3204 0.40 -0.6
3,802,496 + Echvi_3204 0.42 +0.2
3,802,497 - Echvi_3204 0.42 +0.5
3,802,497 - Echvi_3204 0.42 +0.5
3,802,550 - Echvi_3204 0.51 +0.5
3,802,643 + Echvi_3204 0.67 +0.9
3,802,653 + Echvi_3204 0.69 +0.6
3,802,813 + +0.1
3,802,898 + -0.2
3,802,908 + Echvi_3205 0.11 +0.2
3,803,064 + Echvi_3205 0.32 -0.8
3,803,065 - Echvi_3205 0.32 -3.1
3,803,065 - Echvi_3205 0.32 +1.0
3,803,065 - Echvi_3205 0.32 -0.4
3,803,065 - Echvi_3205 0.32 -1.7
3,803,267 - Echvi_3205 0.61 +0.7
3,803,267 - Echvi_3205 0.61 +0.2
3,803,267 - Echvi_3205 0.61 +0.7
3,803,276 + Echvi_3205 0.62 -1.3
3,803,312 - Echvi_3205 0.67 +0.4
3,803,450 - Echvi_3205 0.86 -0.6
3,803,524 + -0.9
3,803,524 + +0.4
3,803,525 - +0.7
3,803,525 - -3.6
3,803,527 + -1.5
3,803,555 - -1.3
3,803,573 + -1.1
3,803,574 - -0.1
3,803,603 + +0.3
3,803,626 + +0.5
3,803,626 + +0.3
3,803,627 - +1.0
3,803,675 + Echvi_3206 0.10 -1.1
3,803,706 - Echvi_3206 0.12 -1.0
3,803,706 - Echvi_3206 0.12 +0.8
3,803,706 - Echvi_3206 0.12 -1.2
3,803,742 + Echvi_3206 0.15 +0.5
3,803,742 + Echvi_3206 0.15 +0.4
3,803,743 - Echvi_3206 0.15 -3.1
3,803,746 + Echvi_3206 0.15 -0.1
3,803,747 - Echvi_3206 0.16 -1.1
3,803,747 - Echvi_3206 0.16 -0.7
3,803,748 + Echvi_3206 0.16 +1.0
3,803,750 + Echvi_3206 0.16 -0.9
3,803,751 - Echvi_3206 0.16 -0.3
3,803,751 - Echvi_3206 0.16 -0.6
3,803,764 + Echvi_3206 0.17 -0.4
3,803,782 + Echvi_3206 0.18 +0.8
3,803,785 - Echvi_3206 0.18 -2.6
3,803,830 + Echvi_3206 0.22 +2.5

Or see this region's nucleotide sequence