Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2894

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2892 and Echvi_2893 are separated by 137 nucleotidesEchvi_2893 and Echvi_2894 are separated by 13 nucleotidesEchvi_2894 and Echvi_2895 are separated by 3 nucleotides Echvi_2892: Echvi_2892 - Protein of unknown function, DUF481., at 3,462,391 to 3,463,608 _2892 Echvi_2893: Echvi_2893 - hypothetical protein, at 3,463,746 to 3,464,108 _2893 Echvi_2894: Echvi_2894 - YceI-like domain., at 3,464,122 to 3,464,661 _2894 Echvi_2895: Echvi_2895 - hypothetical protein, at 3,464,665 to 3,465,567 _2895 Position (kb) 3464 3465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3463.138 kb on - strand, within Echvi_2892at 3463.172 kb on + strand, within Echvi_2892at 3463.225 kb on + strand, within Echvi_2892at 3463.225 kb on + strand, within Echvi_2892at 3463.226 kb on - strand, within Echvi_2892at 3463.248 kb on - strand, within Echvi_2892at 3463.291 kb on + strand, within Echvi_2892at 3463.324 kb on + strand, within Echvi_2892at 3463.325 kb on - strand, within Echvi_2892at 3463.325 kb on - strand, within Echvi_2892at 3463.348 kb on + strand, within Echvi_2892at 3463.348 kb on + strand, within Echvi_2892at 3463.348 kb on + strand, within Echvi_2892at 3463.349 kb on - strand, within Echvi_2892at 3463.349 kb on - strand, within Echvi_2892at 3463.350 kb on + strand, within Echvi_2892at 3463.350 kb on + strand, within Echvi_2892at 3463.351 kb on - strand, within Echvi_2892at 3463.457 kb on + strand, within Echvi_2892at 3463.511 kb on + strandat 3463.512 kb on - strandat 3463.522 kb on + strandat 3463.524 kb on + strandat 3463.525 kb on - strandat 3463.525 kb on - strandat 3463.529 kb on + strandat 3463.529 kb on + strandat 3463.597 kb on + strandat 3463.599 kb on + strandat 3463.600 kb on - strandat 3463.645 kb on + strandat 3463.651 kb on - strandat 3463.651 kb on - strandat 3463.703 kb on + strandat 3463.703 kb on + strandat 3463.712 kb on - strandat 3463.740 kb on + strandat 3463.862 kb on + strand, within Echvi_2893at 3463.869 kb on - strand, within Echvi_2893at 3463.885 kb on + strand, within Echvi_2893at 3463.885 kb on + strand, within Echvi_2893at 3463.886 kb on - strand, within Echvi_2893at 3463.898 kb on + strand, within Echvi_2893at 3463.904 kb on + strand, within Echvi_2893at 3463.905 kb on - strand, within Echvi_2893at 3463.955 kb on + strand, within Echvi_2893at 3464.165 kb on + strandat 3464.165 kb on + strandat 3464.166 kb on - strandat 3464.205 kb on + strand, within Echvi_2894at 3464.266 kb on - strand, within Echvi_2894at 3464.267 kb on + strand, within Echvi_2894at 3464.267 kb on + strand, within Echvi_2894at 3464.268 kb on - strand, within Echvi_2894at 3464.268 kb on - strand, within Echvi_2894at 3464.268 kb on - strand, within Echvi_2894at 3464.268 kb on - strand, within Echvi_2894at 3464.268 kb on - strand, within Echvi_2894at 3464.287 kb on - strand, within Echvi_2894at 3464.582 kb on + strand, within Echvi_2894at 3464.650 kb on - strandat 3464.659 kb on + strandat 3464.835 kb on - strand, within Echvi_2895at 3464.865 kb on + strand, within Echvi_2895at 3464.872 kb on - strand, within Echvi_2895at 3464.905 kb on + strand, within Echvi_2895at 3464.905 kb on + strand, within Echvi_2895at 3464.953 kb on + strand, within Echvi_2895at 3465.009 kb on - strand, within Echvi_2895at 3465.010 kb on + strand, within Echvi_2895at 3465.011 kb on - strand, within Echvi_2895at 3465.031 kb on - strand, within Echvi_2895at 3465.086 kb on - strand, within Echvi_2895at 3465.105 kb on + strand, within Echvi_2895at 3465.105 kb on + strand, within Echvi_2895at 3465.125 kb on + strand, within Echvi_2895at 3465.126 kb on - strand, within Echvi_2895at 3465.150 kb on - strand, within Echvi_2895at 3465.150 kb on - strand, within Echvi_2895at 3465.155 kb on - strand, within Echvi_2895at 3465.170 kb on + strand, within Echvi_2895at 3465.171 kb on - strand, within Echvi_2895at 3465.204 kb on - strand, within Echvi_2895at 3465.204 kb on - strand, within Echvi_2895at 3465.204 kb on - strand, within Echvi_2895at 3465.221 kb on - strand, within Echvi_2895at 3465.331 kb on + strand, within Echvi_2895at 3465.332 kb on - strand, within Echvi_2895at 3465.349 kb on + strand, within Echvi_2895at 3465.369 kb on + strand, within Echvi_2895at 3465.370 kb on - strand, within Echvi_2895at 3465.462 kb on + strand, within Echvi_2895at 3465.462 kb on + strand, within Echvi_2895at 3465.566 kb on - strandat 3465.572 kb on + strandat 3465.575 kb on + strandat 3465.620 kb on - strandat 3465.626 kb on + strandat 3465.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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3,463,138 - Echvi_2892 0.61 -0.7
3,463,172 + Echvi_2892 0.64 -0.2
3,463,225 + Echvi_2892 0.68 -2.1
3,463,225 + Echvi_2892 0.68 -2.0
3,463,226 - Echvi_2892 0.69 +0.8
3,463,248 - Echvi_2892 0.70 -0.9
3,463,291 + Echvi_2892 0.74 +1.0
3,463,324 + Echvi_2892 0.77 -1.2
3,463,325 - Echvi_2892 0.77 +0.0
3,463,325 - Echvi_2892 0.77 +1.2
3,463,348 + Echvi_2892 0.79 -1.2
3,463,348 + Echvi_2892 0.79 +1.0
3,463,348 + Echvi_2892 0.79 +0.8
3,463,349 - Echvi_2892 0.79 -1.6
3,463,349 - Echvi_2892 0.79 -0.9
3,463,350 + Echvi_2892 0.79 +0.4
3,463,350 + Echvi_2892 0.79 +1.3
3,463,351 - Echvi_2892 0.79 -1.2
3,463,457 + Echvi_2892 0.88 -0.9
3,463,511 + +0.2
3,463,512 - +1.0
3,463,522 + -0.5
3,463,524 + +1.6
3,463,525 - -0.7
3,463,525 - +0.0
3,463,529 + -0.2
3,463,529 + +0.0
3,463,597 + +1.0
3,463,599 + +0.2
3,463,600 - -1.6
3,463,645 + +0.1
3,463,651 - -0.5
3,463,651 - +0.3
3,463,703 + -0.3
3,463,703 + -1.1
3,463,712 - -1.9
3,463,740 + -3.2
3,463,862 + Echvi_2893 0.32 +0.5
3,463,869 - Echvi_2893 0.34 +0.2
3,463,885 + Echvi_2893 0.38 -1.8
3,463,885 + Echvi_2893 0.38 -0.5
3,463,886 - Echvi_2893 0.39 -0.0
3,463,898 + Echvi_2893 0.42 -1.5
3,463,904 + Echvi_2893 0.44 -1.4
3,463,905 - Echvi_2893 0.44 -0.0
3,463,955 + Echvi_2893 0.58 -0.9
3,464,165 + +0.5
3,464,165 + -0.2
3,464,166 - -0.9
3,464,205 + Echvi_2894 0.15 +0.8
3,464,266 - Echvi_2894 0.27 +1.9
3,464,267 + Echvi_2894 0.27 +1.7
3,464,267 + Echvi_2894 0.27 +1.2
3,464,268 - Echvi_2894 0.27 +0.7
3,464,268 - Echvi_2894 0.27 -0.7
3,464,268 - Echvi_2894 0.27 -1.0
3,464,268 - Echvi_2894 0.27 +1.2
3,464,268 - Echvi_2894 0.27 +0.4
3,464,287 - Echvi_2894 0.31 -1.1
3,464,582 + Echvi_2894 0.85 -0.1
3,464,650 - +0.3
3,464,659 + -0.1
3,464,835 - Echvi_2895 0.19 -0.2
3,464,865 + Echvi_2895 0.22 +0.2
3,464,872 - Echvi_2895 0.23 -0.6
3,464,905 + Echvi_2895 0.27 -0.7
3,464,905 + Echvi_2895 0.27 -0.0
3,464,953 + Echvi_2895 0.32 -0.9
3,465,009 - Echvi_2895 0.38 +0.9
3,465,010 + Echvi_2895 0.38 +0.5
3,465,011 - Echvi_2895 0.38 +1.4
3,465,031 - Echvi_2895 0.41 +0.2
3,465,086 - Echvi_2895 0.47 -1.2
3,465,105 + Echvi_2895 0.49 -0.6
3,465,105 + Echvi_2895 0.49 +0.2
3,465,125 + Echvi_2895 0.51 +0.5
3,465,126 - Echvi_2895 0.51 +1.6
3,465,150 - Echvi_2895 0.54 -0.5
3,465,150 - Echvi_2895 0.54 -0.3
3,465,155 - Echvi_2895 0.54 -1.2
3,465,170 + Echvi_2895 0.56 +0.2
3,465,171 - Echvi_2895 0.56 -0.7
3,465,204 - Echvi_2895 0.60 -1.0
3,465,204 - Echvi_2895 0.60 -0.5
3,465,204 - Echvi_2895 0.60 -0.1
3,465,221 - Echvi_2895 0.62 +0.0
3,465,331 + Echvi_2895 0.74 +0.8
3,465,332 - Echvi_2895 0.74 +0.0
3,465,349 + Echvi_2895 0.76 +0.5
3,465,369 + Echvi_2895 0.78 +0.2
3,465,370 - Echvi_2895 0.78 -0.3
3,465,462 + Echvi_2895 0.88 +0.4
3,465,462 + Echvi_2895 0.88 +0.8
3,465,566 - +1.1
3,465,572 + +0.9
3,465,575 + +0.0
3,465,620 - -0.9
3,465,626 + +0.5
3,465,640 + -1.6

Or see this region's nucleotide sequence