Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2447

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2446 and Echvi_2447 are separated by 85 nucleotidesEchvi_2447 and Echvi_2448 overlap by 4 nucleotidesEchvi_2448 and Echvi_2449 are separated by 155 nucleotides Echvi_2446: Echvi_2446 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 2,905,313 to 2,906,596 _2446 Echvi_2447: Echvi_2447 - competence/damage-inducible protein CinA C-terminal domain, at 2,906,682 to 2,907,938 _2447 Echvi_2448: Echvi_2448 - Dihydrofolate reductase, at 2,907,935 to 2,908,468 _2448 Echvi_2449: Echvi_2449 - hypothetical protein, at 2,908,624 to 2,909,562 _2449 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -2 -1 0 1 2at 2906.740 kb on + strandat 2906.741 kb on - strandat 2906.963 kb on + strand, within Echvi_2447at 2906.985 kb on + strand, within Echvi_2447at 2907.175 kb on + strand, within Echvi_2447at 2907.179 kb on + strand, within Echvi_2447at 2907.181 kb on + strand, within Echvi_2447at 2907.222 kb on + strand, within Echvi_2447at 2907.223 kb on - strand, within Echvi_2447at 2907.243 kb on + strand, within Echvi_2447at 2907.264 kb on - strand, within Echvi_2447at 2907.298 kb on + strand, within Echvi_2447at 2907.299 kb on - strand, within Echvi_2447at 2907.495 kb on + strand, within Echvi_2447at 2907.567 kb on - strand, within Echvi_2447at 2907.816 kb on - strandat 2907.889 kb on + strandat 2908.474 kb on - strandat 2908.567 kb on - strandat 2908.567 kb on - strandat 2908.683 kb on + strandat 2908.684 kb on - strandat 2908.704 kb on + strandat 2908.713 kb on + strandat 2908.835 kb on + strand, within Echvi_2449at 2908.836 kb on - strand, within Echvi_2449at 2908.887 kb on - strand, within Echvi_2449at 2908.907 kb on + strand, within Echvi_2449at 2908.907 kb on + strand, within Echvi_2449at 2908.907 kb on + strand, within Echvi_2449at 2908.907 kb on + strand, within Echvi_2449at 2908.908 kb on - strand, within Echvi_2449at 2908.923 kb on - strand, within Echvi_2449

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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2,906,740 + +0.6
2,906,741 - -0.6
2,906,963 + Echvi_2447 0.22 -0.2
2,906,985 + Echvi_2447 0.24 +0.8
2,907,175 + Echvi_2447 0.39 +2.1
2,907,179 + Echvi_2447 0.40 +0.7
2,907,181 + Echvi_2447 0.40 +0.1
2,907,222 + Echvi_2447 0.43 -0.2
2,907,223 - Echvi_2447 0.43 +0.1
2,907,243 + Echvi_2447 0.45 +0.3
2,907,264 - Echvi_2447 0.46 +0.3
2,907,298 + Echvi_2447 0.49 +0.3
2,907,299 - Echvi_2447 0.49 -0.7
2,907,495 + Echvi_2447 0.65 +0.8
2,907,567 - Echvi_2447 0.70 +2.4
2,907,816 - -0.4
2,907,889 + +1.1
2,908,474 - -1.0
2,908,567 - -0.6
2,908,567 - -1.7
2,908,683 + -0.1
2,908,684 - +0.7
2,908,704 + -0.3
2,908,713 + -0.5
2,908,835 + Echvi_2449 0.22 -0.3
2,908,836 - Echvi_2449 0.23 -2.3
2,908,887 - Echvi_2449 0.28 +0.4
2,908,907 + Echvi_2449 0.30 +0.9
2,908,907 + Echvi_2449 0.30 +0.6
2,908,907 + Echvi_2449 0.30 +0.2
2,908,907 + Echvi_2449 0.30 -0.4
2,908,908 - Echvi_2449 0.30 -0.2
2,908,923 - Echvi_2449 0.32 +0.3

Or see this region's nucleotide sequence