Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2067

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2066 and Echvi_2067 are separated by 139 nucleotidesEchvi_2067 and Echvi_2068 are separated by 151 nucleotides Echvi_2066: Echvi_2066 - Enoyl-[acyl-carrier-protein] reductase (NADH), at 2,436,009 to 2,436,827 _2066 Echvi_2067: Echvi_2067 - DNA repair protein RecN, at 2,436,967 to 2,438,619 _2067 Echvi_2068: Echvi_2068 - hypothetical protein, at 2,438,771 to 2,439,670 _2068 Position (kb) 2436 2437 2438 2439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2435.971 kb on + strandat 2435.972 kb on - strandat 2435.977 kb on + strandat 2436.833 kb on - strandat 2436.901 kb on + strandat 2436.903 kb on + strandat 2437.104 kb on + strandat 2437.105 kb on - strandat 2437.113 kb on - strandat 2437.121 kb on + strandat 2437.121 kb on + strandat 2437.122 kb on - strandat 2437.145 kb on - strand, within Echvi_2067at 2437.246 kb on + strand, within Echvi_2067at 2437.246 kb on + strand, within Echvi_2067at 2437.246 kb on + strand, within Echvi_2067at 2437.266 kb on + strand, within Echvi_2067at 2437.296 kb on - strand, within Echvi_2067at 2437.444 kb on + strand, within Echvi_2067at 2437.444 kb on + strand, within Echvi_2067at 2437.445 kb on - strand, within Echvi_2067at 2437.477 kb on + strand, within Echvi_2067at 2437.537 kb on - strand, within Echvi_2067at 2437.555 kb on + strand, within Echvi_2067at 2437.555 kb on + strand, within Echvi_2067at 2437.556 kb on - strand, within Echvi_2067at 2437.700 kb on + strand, within Echvi_2067at 2437.700 kb on + strand, within Echvi_2067at 2437.707 kb on + strand, within Echvi_2067at 2437.708 kb on - strand, within Echvi_2067at 2437.795 kb on + strand, within Echvi_2067at 2437.795 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.850 kb on + strand, within Echvi_2067at 2437.907 kb on - strand, within Echvi_2067at 2438.042 kb on - strand, within Echvi_2067at 2438.070 kb on + strand, within Echvi_2067at 2438.147 kb on + strand, within Echvi_2067at 2438.148 kb on - strand, within Echvi_2067at 2438.169 kb on + strand, within Echvi_2067at 2438.188 kb on + strand, within Echvi_2067at 2438.201 kb on + strand, within Echvi_2067at 2438.282 kb on - strand, within Echvi_2067at 2438.347 kb on - strand, within Echvi_2067at 2438.350 kb on - strand, within Echvi_2067at 2438.402 kb on + strand, within Echvi_2067at 2438.403 kb on - strand, within Echvi_2067at 2438.538 kb on + strandat 2438.549 kb on - strandat 2438.549 kb on - strandat 2438.591 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.694 kb on - strandat 2438.694 kb on - strandat 2438.726 kb on - strandat 2438.780 kb on - strandat 2438.780 kb on - strandat 2438.823 kb on + strandat 2438.824 kb on - strandat 2438.824 kb on - strandat 2438.935 kb on + strand, within Echvi_2068at 2438.936 kb on - strand, within Echvi_2068at 2439.011 kb on + strand, within Echvi_2068at 2439.036 kb on + strand, within Echvi_2068at 2439.036 kb on + strand, within Echvi_2068at 2439.037 kb on - strand, within Echvi_2068at 2439.037 kb on - strand, within Echvi_2068at 2439.074 kb on + strand, within Echvi_2068at 2439.074 kb on + strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.087 kb on - strand, within Echvi_2068at 2439.112 kb on + strand, within Echvi_2068at 2439.237 kb on + strand, within Echvi_2068at 2439.238 kb on - strand, within Echvi_2068at 2439.243 kb on + strand, within Echvi_2068at 2439.246 kb on + strand, within Echvi_2068at 2439.289 kb on + strand, within Echvi_2068at 2439.363 kb on + strand, within Echvi_2068at 2439.375 kb on + strand, within Echvi_2068at 2439.376 kb on - strand, within Echvi_2068at 2439.376 kb on - strand, within Echvi_2068at 2439.377 kb on + strand, within Echvi_2068at 2439.377 kb on + strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.386 kb on + strand, within Echvi_2068at 2439.417 kb on + strand, within Echvi_2068at 2439.418 kb on - strand, within Echvi_2068at 2439.448 kb on + strand, within Echvi_2068at 2439.449 kb on - strand, within Echvi_2068at 2439.483 kb on + strand, within Echvi_2068at 2439.484 kb on - strand, within Echvi_2068

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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2,435,971 + -0.5
2,435,972 - +0.4
2,435,977 + +0.2
2,436,833 - -1.8
2,436,901 + -0.4
2,436,903 + +1.5
2,437,104 + -0.7
2,437,105 - +0.7
2,437,113 - -0.8
2,437,121 + -0.7
2,437,121 + +1.3
2,437,122 - -0.8
2,437,145 - Echvi_2067 0.11 -1.0
2,437,246 + Echvi_2067 0.17 +0.7
2,437,246 + Echvi_2067 0.17 -0.1
2,437,246 + Echvi_2067 0.17 -1.3
2,437,266 + Echvi_2067 0.18 -1.0
2,437,296 - Echvi_2067 0.20 -0.6
2,437,444 + Echvi_2067 0.29 +1.0
2,437,444 + Echvi_2067 0.29 +0.9
2,437,445 - Echvi_2067 0.29 +1.2
2,437,477 + Echvi_2067 0.31 +0.0
2,437,537 - Echvi_2067 0.34 -1.2
2,437,555 + Echvi_2067 0.36 +0.8
2,437,555 + Echvi_2067 0.36 -0.5
2,437,556 - Echvi_2067 0.36 +0.2
2,437,700 + Echvi_2067 0.44 +0.3
2,437,700 + Echvi_2067 0.44 -1.0
2,437,707 + Echvi_2067 0.45 -0.0
2,437,708 - Echvi_2067 0.45 -1.3
2,437,795 + Echvi_2067 0.50 -0.1
2,437,795 + Echvi_2067 0.50 -0.3
2,437,807 + Echvi_2067 0.51 -0.5
2,437,807 + Echvi_2067 0.51 +0.7
2,437,807 + Echvi_2067 0.51 -1.4
2,437,807 + Echvi_2067 0.51 +1.3
2,437,807 + Echvi_2067 0.51 +2.2
2,437,807 + Echvi_2067 0.51 -0.5
2,437,808 - Echvi_2067 0.51 -0.3
2,437,808 - Echvi_2067 0.51 -1.0
2,437,808 - Echvi_2067 0.51 +0.8
2,437,808 - Echvi_2067 0.51 -0.0
2,437,808 - Echvi_2067 0.51 +0.2
2,437,808 - Echvi_2067 0.51 -0.3
2,437,808 - Echvi_2067 0.51 -2.9
2,437,850 + Echvi_2067 0.53 -0.3
2,437,907 - Echvi_2067 0.57 -0.7
2,438,042 - Echvi_2067 0.65 -1.8
2,438,070 + Echvi_2067 0.67 -1.0
2,438,147 + Echvi_2067 0.71 +0.5
2,438,148 - Echvi_2067 0.71 -0.1
2,438,169 + Echvi_2067 0.73 -0.6
2,438,188 + Echvi_2067 0.74 +0.2
2,438,201 + Echvi_2067 0.75 -0.8
2,438,282 - Echvi_2067 0.80 +0.7
2,438,347 - Echvi_2067 0.83 +1.5
2,438,350 - Echvi_2067 0.84 +0.1
2,438,402 + Echvi_2067 0.87 -1.0
2,438,403 - Echvi_2067 0.87 -2.2
2,438,538 + +1.7
2,438,549 - +0.0
2,438,549 - +0.7
2,438,591 + -0.2
2,438,693 + +0.8
2,438,693 + -0.4
2,438,693 + -0.3
2,438,693 + -2.0
2,438,693 + -0.6
2,438,694 - -0.3
2,438,694 - +0.1
2,438,726 - +0.0
2,438,780 - +2.2
2,438,780 - +0.4
2,438,823 + +0.7
2,438,824 - -0.0
2,438,824 - +0.2
2,438,935 + Echvi_2068 0.18 -0.6
2,438,936 - Echvi_2068 0.18 -0.4
2,439,011 + Echvi_2068 0.27 +0.2
2,439,036 + Echvi_2068 0.29 +0.7
2,439,036 + Echvi_2068 0.29 +0.2
2,439,037 - Echvi_2068 0.30 +0.4
2,439,037 - Echvi_2068 0.30 +0.8
2,439,074 + Echvi_2068 0.34 -0.4
2,439,074 + Echvi_2068 0.34 -0.5
2,439,075 - Echvi_2068 0.34 -0.7
2,439,075 - Echvi_2068 0.34 +0.3
2,439,075 - Echvi_2068 0.34 +0.7
2,439,075 - Echvi_2068 0.34 +0.5
2,439,087 - Echvi_2068 0.35 -0.1
2,439,112 + Echvi_2068 0.38 -0.3
2,439,237 + Echvi_2068 0.52 -0.7
2,439,238 - Echvi_2068 0.52 +1.2
2,439,243 + Echvi_2068 0.52 +1.5
2,439,246 + Echvi_2068 0.53 -1.6
2,439,289 + Echvi_2068 0.58 -0.3
2,439,363 + Echvi_2068 0.66 -1.6
2,439,375 + Echvi_2068 0.67 -0.1
2,439,376 - Echvi_2068 0.67 +0.4
2,439,376 - Echvi_2068 0.67 +0.3
2,439,377 + Echvi_2068 0.67 -0.8
2,439,377 + Echvi_2068 0.67 -2.6
2,439,378 - Echvi_2068 0.67 +1.0
2,439,378 - Echvi_2068 0.67 +1.5
2,439,378 - Echvi_2068 0.67 +0.0
2,439,386 + Echvi_2068 0.68 -0.1
2,439,417 + Echvi_2068 0.72 -0.8
2,439,418 - Echvi_2068 0.72 +0.7
2,439,448 + Echvi_2068 0.75 +1.5
2,439,449 - Echvi_2068 0.75 +1.0
2,439,483 + Echvi_2068 0.79 -3.6
2,439,484 - Echvi_2068 0.79 -0.3

Or see this region's nucleotide sequence