Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4128

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4127 and EX28DRAFT_4128 are separated by 385 nucleotidesEX28DRAFT_4128 and EX28DRAFT_4129 are separated by 61 nucleotidesEX28DRAFT_4129 and EX28DRAFT_4130 are separated by 36 nucleotides EX28DRAFT_4127: EX28DRAFT_4127 - gluconate transporter, at 107,209 to 108,525 _4127 EX28DRAFT_4128: EX28DRAFT_4128 - IscR-regulated protein YhgI, at 108,911 to 109,486 _4128 EX28DRAFT_4129: EX28DRAFT_4129 - Predicted amidophosphoribosyltransferases, at 109,548 to 110,231 _4129 EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041 _4130 Position (kb) 108 109 110Strain fitness (log2 ratio) -1 0 1 2at 108.009 kb on + strand, within EX28DRAFT_4127at 108.009 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.114 kb on - strand, within EX28DRAFT_4127at 108.277 kb on - strand, within EX28DRAFT_4127at 108.490 kb on + strandat 108.490 kb on + strandat 108.490 kb on + strandat 108.491 kb on - strandat 108.491 kb on - strandat 108.491 kb on - strandat 108.531 kb on - strandat 108.759 kb on + strandat 108.761 kb on + strandat 108.762 kb on - strandat 108.762 kb on - strandat 108.817 kb on + strandat 108.912 kb on + strandat 108.913 kb on - strandat 108.916 kb on - strandat 108.919 kb on - strandat 108.919 kb on - strandat 109.360 kb on - strand, within EX28DRAFT_4128at 109.478 kb on - strandat 109.487 kb on - strandat 109.556 kb on + strandat 109.572 kb on + strandat 109.573 kb on - strandat 109.573 kb on - strandat 109.573 kb on - strandat 109.770 kb on - strand, within EX28DRAFT_4129at 109.770 kb on - strand, within EX28DRAFT_4129at 109.868 kb on - strand, within EX28DRAFT_4129at 109.870 kb on - strand, within EX28DRAFT_4129at 110.023 kb on + strand, within EX28DRAFT_4129at 110.024 kb on - strand, within EX28DRAFT_4129at 110.024 kb on - strand, within EX28DRAFT_4129at 110.262 kb on + strandat 110.262 kb on + strandat 110.262 kb on + strandat 110.263 kb on - strandat 110.350 kb on + strand, within EX28DRAFT_4130at 110.350 kb on + strand, within EX28DRAFT_4130at 110.351 kb on - strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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108,009 + EX28DRAFT_4127 0.61 +0.7
108,009 + EX28DRAFT_4127 0.61 +0.3
108,113 + EX28DRAFT_4127 0.69 +2.0
108,113 + EX28DRAFT_4127 0.69 -0.1
108,114 - EX28DRAFT_4127 0.69 +0.0
108,277 - EX28DRAFT_4127 0.81 +0.3
108,490 + -0.1
108,490 + -1.7
108,490 + +0.0
108,491 - -0.2
108,491 - +0.1
108,491 - +0.0
108,531 - -0.8
108,759 + +1.0
108,761 + +0.1
108,762 - -1.2
108,762 - -0.4
108,817 + +0.2
108,912 + +0.7
108,913 - +0.1
108,916 - +0.4
108,919 - +1.8
108,919 - -0.0
109,360 - EX28DRAFT_4128 0.78 -1.3
109,478 - -0.2
109,487 - -0.0
109,556 + -1.7
109,572 + -0.4
109,573 - +0.9
109,573 - +0.1
109,573 - +0.2
109,770 - EX28DRAFT_4129 0.32 -0.0
109,770 - EX28DRAFT_4129 0.32 -0.9
109,868 - EX28DRAFT_4129 0.47 +0.2
109,870 - EX28DRAFT_4129 0.47 +0.4
110,023 + EX28DRAFT_4129 0.69 +0.1
110,024 - EX28DRAFT_4129 0.70 +1.4
110,024 - EX28DRAFT_4129 0.70 +0.8
110,262 + +0.8
110,262 + +0.2
110,262 + +0.1
110,263 - +0.1
110,350 + EX28DRAFT_4130 0.11 +1.0
110,350 + EX28DRAFT_4130 0.11 +0.0
110,351 - EX28DRAFT_4130 0.11 +0.2
110,362 + EX28DRAFT_4130 0.12 +0.5
110,362 + EX28DRAFT_4130 0.12 -0.1
110,362 + EX28DRAFT_4130 0.12 +0.4
110,363 - EX28DRAFT_4130 0.12 -0.0
110,363 - EX28DRAFT_4130 0.12 +0.0
110,363 - EX28DRAFT_4130 0.12 -0.3

Or see this region's nucleotide sequence