Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4074 and EX28DRAFT_4075 are separated by 317 nucleotides EX28DRAFT_4075 and EX28DRAFT_4076 are separated by 167 nucleotides EX28DRAFT_4076 and EX28DRAFT_4077 are separated by 60 nucleotides
EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260
_4074
EX28DRAFT_4075: EX28DRAFT_4075 - Ion channel, at 50,578 to 50,976
_4075
EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169
_4076
EX28DRAFT_4077: EX28DRAFT_4077 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 52,230 to 52,892
_4077
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 50.157 kb on + strand at 50.157 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.217 kb on - strand at 50.217 kb on - strand at 50.242 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.377 kb on + strand at 50.377 kb on + strand at 50.378 kb on - strand at 50.378 kb on - strand at 50.381 kb on + strand at 50.382 kb on - strand at 50.414 kb on - strand at 50.414 kb on - strand at 50.415 kb on + strand at 50.415 kb on + strand at 50.416 kb on - strand at 50.446 kb on + strand at 50.446 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.515 kb on - strand at 50.553 kb on + strand at 50.586 kb on - strand at 50.586 kb on - strand at 50.586 kb on - strand at 50.596 kb on - strand at 50.599 kb on - strand at 50.696 kb on + strand, within EX28DRAFT_4075 at 50.768 kb on - strand, within EX28DRAFT_4075 at 50.787 kb on + strand, within EX28DRAFT_4075 at 50.828 kb on - strand, within EX28DRAFT_4075 at 50.901 kb on - strand, within EX28DRAFT_4075 at 51.005 kb on - strand at 51.009 kb on + strand at 51.010 kb on - strand at 51.010 kb on - strand at 51.014 kb on + strand at 51.014 kb on + strand at 51.015 kb on - strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.144 kb on - strand at 51.144 kb on - strand at 51.231 kb on - strand at 51.324 kb on + strand, within EX28DRAFT_4076 at 51.325 kb on - strand, within EX28DRAFT_4076 at 51.795 kb on + strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 52.130 kb on + strand at 52.133 kb on - strand at 52.173 kb on - strand at 52.413 kb on - strand, within EX28DRAFT_4077 at 52.799 kb on + strand, within EX28DRAFT_4077 at 52.892 kb on + strand at 52.904 kb on - strand at 52.933 kb on + strand at 52.942 kb on + strand at 52.943 kb on - strand at 52.943 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.960 kb on - strand at 52.960 kb on - strand at 53.046 kb on + strand at 53.069 kb on + strand at 53.073 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.132 kb on - strand at 53.140 kb on + strand at 53.140 kb on + strand at 53.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 50,157 + +0.2 50,157 + -0.3 50,216 + -0.2 50,216 + -0.1 50,216 + +0.5 50,216 + +0.5 50,216 + -0.5 50,217 - +0.7 50,217 - -1.8 50,242 + -0.5 50,246 + +0.4 50,246 + -0.2 50,246 + +0.5 50,246 + +0.8 50,377 + +0.2 50,377 + -0.1 50,378 - +0.2 50,378 - +1.4 50,381 + -0.2 50,382 - -0.3 50,414 - -0.1 50,414 - -0.2 50,415 + -0.4 50,415 + -1.5 50,416 - +0.2 50,446 + +1.9 50,446 + -0.4 50,514 + +0.1 50,514 + -0.2 50,514 + +0.2 50,514 + -0.8 50,514 + +0.1 50,515 - -0.1 50,553 + -1.3 50,586 - +0.0 50,586 - -0.1 50,586 - -0.3 50,596 - -0.4 50,599 - -0.0 50,696 + EX28DRAFT_4075 0.30 +0.4 50,768 - EX28DRAFT_4075 0.48 +1.3 50,787 + EX28DRAFT_4075 0.52 -0.4 50,828 - EX28DRAFT_4075 0.63 -0.2 50,901 - EX28DRAFT_4075 0.81 +0.2 51,005 - +0.6 51,009 + -1.3 51,010 - +0.1 51,010 - -0.0 51,014 + +0.3 51,014 + -0.1 51,015 - -0.1 51,143 + +0.5 51,143 + +0.0 51,143 + -0.3 51,143 + -0.7 51,144 - +0.1 51,144 - +1.3 51,231 - -1.4 51,324 + EX28DRAFT_4076 0.18 -0.3 51,325 - EX28DRAFT_4076 0.18 -0.9 51,795 + EX28DRAFT_4076 0.63 -0.2 51,907 - EX28DRAFT_4076 0.74 -1.5 51,907 - EX28DRAFT_4076 0.74 +0.9 51,948 + EX28DRAFT_4076 0.78 -1.4 51,948 + EX28DRAFT_4076 0.78 -0.4 51,948 + EX28DRAFT_4076 0.78 -0.3 52,130 + +1.0 52,133 - -0.2 52,173 - +1.1 52,413 - EX28DRAFT_4077 0.28 -3.0 52,799 + EX28DRAFT_4077 0.86 +0.6 52,892 + +0.9 52,904 - +0.3 52,933 + +0.2 52,942 + +0.2 52,943 - -0.8 52,943 - +0.5 52,957 + +0.0 52,957 + -0.6 52,958 - +0.4 52,960 - +0.4 52,960 - +0.2 53,046 + +0.7 53,069 + +0.0 53,073 + -0.1 53,117 + -0.2 53,117 + +0.5 53,117 + -0.2 53,117 + +0.3 53,132 - -0.2 53,140 + +0.1 53,140 + -0.3 53,141 - -0.6
Or see this region's nucleotide sequence