Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4076

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4074 and EX28DRAFT_4075 are separated by 317 nucleotidesEX28DRAFT_4075 and EX28DRAFT_4076 are separated by 167 nucleotidesEX28DRAFT_4076 and EX28DRAFT_4077 are separated by 60 nucleotides EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260 _4074 EX28DRAFT_4075: EX28DRAFT_4075 - Ion channel, at 50,578 to 50,976 _4075 EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169 _4076 EX28DRAFT_4077: EX28DRAFT_4077 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 52,230 to 52,892 _4077 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.157 kb on + strandat 50.157 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.217 kb on - strandat 50.217 kb on - strandat 50.242 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.377 kb on + strandat 50.377 kb on + strandat 50.378 kb on - strandat 50.378 kb on - strandat 50.381 kb on + strandat 50.382 kb on - strandat 50.414 kb on - strandat 50.414 kb on - strandat 50.415 kb on + strandat 50.415 kb on + strandat 50.416 kb on - strandat 50.446 kb on + strandat 50.446 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.515 kb on - strandat 50.553 kb on + strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.596 kb on - strandat 50.599 kb on - strandat 50.696 kb on + strand, within EX28DRAFT_4075at 50.768 kb on - strand, within EX28DRAFT_4075at 50.787 kb on + strand, within EX28DRAFT_4075at 50.828 kb on - strand, within EX28DRAFT_4075at 50.901 kb on - strand, within EX28DRAFT_4075at 51.005 kb on - strandat 51.009 kb on + strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.014 kb on + strandat 51.014 kb on + strandat 51.015 kb on - strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.231 kb on - strandat 51.324 kb on + strand, within EX28DRAFT_4076at 51.325 kb on - strand, within EX28DRAFT_4076at 51.795 kb on + strand, within EX28DRAFT_4076at 51.907 kb on - strand, within EX28DRAFT_4076at 51.907 kb on - strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076at 52.130 kb on + strandat 52.133 kb on - strandat 52.173 kb on - strandat 52.413 kb on - strand, within EX28DRAFT_4077at 52.799 kb on + strand, within EX28DRAFT_4077at 52.892 kb on + strandat 52.904 kb on - strandat 52.933 kb on + strandat 52.942 kb on + strandat 52.943 kb on - strandat 52.943 kb on - strandat 52.957 kb on + strandat 52.957 kb on + strandat 52.958 kb on - strandat 52.960 kb on - strandat 52.960 kb on - strandat 53.046 kb on + strandat 53.069 kb on + strandat 53.073 kb on + strandat 53.117 kb on + strandat 53.117 kb on + strandat 53.117 kb on + strandat 53.117 kb on + strandat 53.132 kb on - strandat 53.140 kb on + strandat 53.140 kb on + strandat 53.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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50,157 + +0.2
50,157 + -0.3
50,216 + -0.2
50,216 + -0.1
50,216 + +0.5
50,216 + +0.5
50,216 + -0.5
50,217 - +0.7
50,217 - -1.8
50,242 + -0.5
50,246 + +0.4
50,246 + -0.2
50,246 + +0.5
50,246 + +0.8
50,377 + +0.2
50,377 + -0.1
50,378 - +0.2
50,378 - +1.4
50,381 + -0.2
50,382 - -0.3
50,414 - -0.1
50,414 - -0.2
50,415 + -0.4
50,415 + -1.5
50,416 - +0.2
50,446 + +1.9
50,446 + -0.4
50,514 + +0.1
50,514 + -0.2
50,514 + +0.2
50,514 + -0.8
50,514 + +0.1
50,515 - -0.1
50,553 + -1.3
50,586 - +0.0
50,586 - -0.1
50,586 - -0.3
50,596 - -0.4
50,599 - -0.0
50,696 + EX28DRAFT_4075 0.30 +0.4
50,768 - EX28DRAFT_4075 0.48 +1.3
50,787 + EX28DRAFT_4075 0.52 -0.4
50,828 - EX28DRAFT_4075 0.63 -0.2
50,901 - EX28DRAFT_4075 0.81 +0.2
51,005 - +0.6
51,009 + -1.3
51,010 - +0.1
51,010 - -0.0
51,014 + +0.3
51,014 + -0.1
51,015 - -0.1
51,143 + +0.5
51,143 + +0.0
51,143 + -0.3
51,143 + -0.7
51,144 - +0.1
51,144 - +1.3
51,231 - -1.4
51,324 + EX28DRAFT_4076 0.18 -0.3
51,325 - EX28DRAFT_4076 0.18 -0.9
51,795 + EX28DRAFT_4076 0.63 -0.2
51,907 - EX28DRAFT_4076 0.74 -1.5
51,907 - EX28DRAFT_4076 0.74 +0.9
51,948 + EX28DRAFT_4076 0.78 -1.4
51,948 + EX28DRAFT_4076 0.78 -0.4
51,948 + EX28DRAFT_4076 0.78 -0.3
52,130 + +1.0
52,133 - -0.2
52,173 - +1.1
52,413 - EX28DRAFT_4077 0.28 -3.0
52,799 + EX28DRAFT_4077 0.86 +0.6
52,892 + +0.9
52,904 - +0.3
52,933 + +0.2
52,942 + +0.2
52,943 - -0.8
52,943 - +0.5
52,957 + +0.0
52,957 + -0.6
52,958 - +0.4
52,960 - +0.4
52,960 - +0.2
53,046 + +0.7
53,069 + +0.0
53,073 + -0.1
53,117 + -0.2
53,117 + +0.5
53,117 + -0.2
53,117 + +0.3
53,132 - -0.2
53,140 + +0.1
53,140 + -0.3
53,141 - -0.6

Or see this region's nucleotide sequence